PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A08G0192 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CO-like | ||||||||
Protein Properties | Length: 314aa MW: 34138.1 Da PI: 6.4253 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.2 | 1.9e-09 | 24 | 62 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkgHtvvp 41 +++C+ +++ + +fC+++ ++lC +C ++ H+gH +v+ Gh_A08G0192 24 AKTCDGCKSSAAAIFCRTDWVFLCLNCDSNFHSGHGRVS 62 579******99************************9886 PP | |||||||
2 | zf-B_box | 26.3 | 1.5e-08 | 62 | 106 | 4 | 42 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ C+ + lC +C +H+ H++vp+ Gh_A08G0192 62 SMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPI 106 68*****************************66899999*99997 PP | |||||||
3 | CCT | 70.7 | 3.5e-24 | 235 | 278 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Gh_A08G0192 235 REARVLRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 278 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.2E-8 | 22 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.584 | 22 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.6E-7 | 25 | 62 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.29E-6 | 27 | 63 | No hit | No description |
PROSITE profile | PS50119 | 10.921 | 59 | 106 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-6 | 62 | 106 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.11E-9 | 63 | 106 | No hit | No description |
SMART | SM00336 | 7.1E-11 | 64 | 106 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.668 | 235 | 277 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.1E-18 | 235 | 277 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGIEISGGTI IPGGWGAAAM AVAAKTCDGC KSSAAAIFCR TDWVFLCLNC DSNFHSGHGR 60 VSMCEVCEQA PAAVTCKADA AALCVTCDAD IHSANPLARR HERVPIEPFY DSADSIVKSS 120 PFSFLVPTTD HNGTNCKQEI EANKGDSFFT EMDSFIDFGY PNSSQHLHDA AMDSVVPVQT 180 PKPIIPLIND GNCFDTFSYQ TQSSLSHSVS SSSLEVGTVP DGNYHATQVG GSIDREARVL 240 RYKEKRKNRK FEKTIRYASR KAYAESRPRI KGRFAKRTET HNDDVDHMFN NSSSFAVGPA 300 GFMAETDYGV VPSF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.1801 | 0.0 | boll| ovule| root| stem |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ618331 | 0.0 | JQ618331.1 Gossypium hirsutum constans-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017623833.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 5-like | ||||
Swissprot | Q9FHH8 | 3e-99 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | A0A0D3R238 | 0.0 | A0A0D3R238_GOSHI; CONSTANS-like 6 protein | ||||
TrEMBL | A0A0D3R2D7 | 0.0 | A0A0D3R2D7_GOSHI; CONSTANS-like 6 protein | ||||
TrEMBL | A0A0D3R2W5 | 0.0 | A0A0D3R2W5_GOSHI; CONSTANS-like 6 protein | ||||
TrEMBL | A0A0D3R313 | 0.0 | A0A0D3R313_GOSHI; CONSTANS-like 6 protein | ||||
STRING | Gorai.004G030300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24403 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 9e-98 | CONSTANS-like 5 |
Publications ? help Back to Top | |||
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