PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A08G0178
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 256aa    MW: 29078.7 Da    PI: 8.8322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A08G0178genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+d+++++G g W+t +   g++R++k+c++rw +yl
      Gh_A08G0178 17 RGPWTAEEDKILIDYIQKHGHGKWRTLPTNAGLKRCGKSCRLRWANYL 64
                     89********************************************97 PP
2Myb_DNA-binding538.2e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE++ +++++  lG++ W++Ia++++ gRt++++k++w++
      Gh_A08G0178  70 RGKFSDEEEQTIIQLHSVLGNK-WSAIASRLP-GRTDNEIKNYWNT 113
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.4091264IPR017930Myb domain
SuperFamilySSF466897.49E-3115111IPR009057Homeodomain-like
SMARTSM007172.7E-141666IPR001005SANT/Myb domain
PfamPF002492.5E-161764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.0E-251871IPR009057Homeodomain-like
CDDcd001671.65E-111964No hitNo description
PROSITE profilePS5129426.19165119IPR017930Myb domain
SMARTSM007179.7E-1669117IPR001005SANT/Myb domain
PfamPF002491.1E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2772119IPR009057Homeodomain-like
CDDcd001678.22E-1272113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGKQPACSSD KNGEFKRGPW TAEEDKILID YIQKHGHGKW RTLPTNAGLK RCGKSCRLRW  60
ANYLRPDIKR GKFSDEEEQT IIQLHSVLGN KWSAIASRLP GRTDNEIKNY WNTRIKKKLL  120
KMGIDPITHN PALHLLHLSS LLTSFLSNSY NLNNHPNKFL LGTESMSDPN FLIPVLSSSQ  180
NKNQLQNIEK NQAGNTFFQC PDNNQYEQGN QFQECDSKGF FPMQSYGYYD CNLSMDDQNQ  240
TCFSGNISSL GSFGSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-30171197108B-MYB
1h8a_C8e-301211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712483.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR81e-79MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1U8LGH10.0A0A1U8LGH1_GOSHI; transcription factor MYB39-like
STRINGGorai.004G029000.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3606422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-72MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]