PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2353
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 1121aa    MW: 125153 Da    PI: 6.3964
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2353genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22126227199
                  EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                  f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +d++s+f  
  Gh_A07G2353 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHENPWTFRHIYRGQPKRHLLTTGWSVFVSNKRLFAGDSVLFIRDEKSQF-- 220
                  99*****************************9445444.38************************************************7766666.. PP

                  EEEEE-S CS
           B3  93 vvkvfrk 99 
                  +++++r+
  Gh_A07G2353 221 LLGIRRA 227
                  9999997 PP
2Auxin_resp124.86e-41252334183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+++s+F+++YnPras+seFvv+++k++ka++++vs+GmRf+m+fete++  rr++Gt++g+sdldpvrW+nS+Wr+L+
  Gh_A07G2353 252 AAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEECGVRRYMGTITGISDLDPVRWKNSQWRNLQ 334
                  79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.31E-43116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.4E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.81E-20125226No hitNo description
SMARTSM010191.1E-23126228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266126228IPR003340B3 DNA binding domain
PfamPF023626.7E-21126227IPR003340B3 DNA binding domain
PfamPF065075.2E-36252334IPR010525Auxin response factor
PfamPF023094.3E-99911079IPR033389AUX/IAA domain
PROSITE profilePS5174525.1569941087IPR000270PB1 domain
SuperFamilySSF542775.4E-99971072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1121 aa     Download sequence    Send to blast
MKAPPNGFLA NPAEGERKSI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDFVPSYPNL PSKLICMLHN VTLHADPETD EVYAQMTLQP VNKYDREALL ASDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHENPWTFRH  180
IYRGQPKRHL LTTGWSVFVS NKRLFAGDSV LFIRDEKSQF LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAAANNS PFTIFYNPRA SPSEFVVPLA KYNKAMYTQV SLGMRFRMMF  300
ETEECGVRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERPTRVS IWDIEPVVTP  360
FYICPPPFFR PRFPKQPGMP DNDNDVENAF KRAMPWLGDD FGMKDSPNSI FPGLSLVQWM  420
NMQQNNQFAA AQSGLFPSMV SSNPLHNSLG TDDPSKLLNF QAPVLPASNM QFNKANPNQV  480
NQLSQAPMTW PQQQQLQQLL QTPLNQNPQQ QLQQRQSQLQ PQSHLQQQPQ PQPPLQQQQQ  540
QQQRQQAQPQ PQPQQQQPPL QQLQQQQRQQ AQPQLLQQQF LPAQVNNGIT ASNQMPNQNL  600
HQPGVYSQIQ QQQQQQQILT SNGQSTQTTL PANKASYPLT SLAQDTQIQQ QVEQQPNLVQ  660
SQQQQTQLQQ NLSQRSQQQP QIQQLAQQGL SEQQFQLLQK LQQQQQSSQQ LLSPTGSLSQ  720
SPVVQQQPMH QQNQPMQQVP LSQSQQTLGS NGFSTSMLMQ PQQLVVSQSQ NQNKPLMAMR  780
THSGLTDGDA PSCSTSPSTN NCQVSPSSFL SRSQQVPSMV VTDPVVEPAS TLVQELQSKP  840
DIRIKHELLA SKGPDQSKYK STVTDQLEAS SSGTSYCLDA GTIQHNFSLP TFLEGDVQSH  900
PRNNLQFSAN IDGLAPDTLL SRGYDSQKDL QNLLSNYGSN PRDIDTELST AAISPQSFGV  960
PNIPFKTGCS NDVAINDAGV LNGGLWANQT QRMRTYTKVQ KRGSVGRSID VTRCKGYDEL  1020
RHDLARMFGI EGQMEDPQSS DWKLVYVDHE NDILLVGDDP WEEFVSCVQS IKILSSLEVQ  1080
QMSLDGDLGN VPVPNQACSE IDSGNAWRGH YDDTSAASFN R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1731535545388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.76150.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716937.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A1U8LQT70.0A0A1U8LQT7_GOSHI; Auxin response factor
STRINGAES921670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26292665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19