PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G2287

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 847aa MW: 94834.2 Da PI: 7.4824

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G2287	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.7	7.1e-09	220	280	20	81
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 ++ rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Gh_A07G2287 220 QSTRGKTRADKDREVAEFLNKHGINRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 280 567889999999**************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	5.94E-16	684	838	IPR011009	Protein kinase-like domain
CDD	cd00180	6.39E-12	698	835	No hit	No description
Gene3D	G3DSA:1.10.510.10	8.5E-6	700	798	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 847 aa Download sequence Send to blast
MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY 60 VPTGATSSPF EQQFESVNPK RSRYNSGQWK LLPSSSYLQS QAQMAIITSE SSPSPTNPIN 120 PQTQAQTTAA SSSDAASSPP HSPLPSTTSG QETNKPEDQQ FHHQFRKGKY VSPVWKPNEM 180 LWLARAWRIQ YQGGSDASGS SSRSGHQEIG PFTGSDLAVQ STRGKTRADK DREVAEFLNK 240 HGINRDAKTA GTKWDNMLGE FRKVYEWERG GEREQVGKSY FRLSPYERKL HRLPASFDEE 300 VFEELSQFMG PRMRTSQSRG ASAIASSDDG RSVLSGPRPL PPAPPFKVDE LPLSGFTERA 360 QLPFAEPSIR SVPPLELQDP TDYYIGCLRV PPTVLPGLFE LSWHLQEPLP EEYRFPLRKD 420 VYRDLPAGKE VLFTTTSELL DCRAMVYDVL SSIIRTNPSL SAATATSRDS FIGLWDDCVN 480 RVISKFCSVE MVIIRKPSSS STEPLQDQWP NVTGFVRNFC LWRGEETDQV REGHPDPSSS 540 LVEKLLWTYM DLPYVLGYYA VGYMVTFCAL SRSQDRILRT DLYSVDLSSP SERLKALVPC 600 CRIAGLLPLL ADRCFNTISN VGSYKQFPFS DFERINLRNG SIMEMTPNTV TRSFSNKKKW 660 AAVKEIYDIL DHRIPHSELI CRACEKDLVL VFKPRGCKFK PINCEQLVEA LKYVTKALVA 720 LHDLCFMHRD LGWDKVLRRS DTENEWFVCG FDEAVGAPQI YPHPVAGTDT DARGRHAPEM 780 GRGLHGVKVD VWGVGYLVKT CGLTNVPKML RELETRCLDQ NPEQRPTAAD CYHHLLQVQS 840 ASSGAPY

Sequence ? help Back to Top

Protein Sequence Length: 847 aa Download sequence Send to blast

MGGNKGDATK KQTPQPTQQL SSSPKEPLEE SSESRQKHLQ QPSAVVVTAT GPPFISAPLY  60
VPTGATSSPF EQQFESVNPK RSRYNSGQWK LLPSSSYLQS QAQMAIITSE SSPSPTNPIN  120
PQTQAQTTAA SSSDAASSPP HSPLPSTTSG QETNKPEDQQ FHHQFRKGKY VSPVWKPNEM  180
LWLARAWRIQ YQGGSDASGS SSRSGHQEIG PFTGSDLAVQ STRGKTRADK DREVAEFLNK  240
HGINRDAKTA GTKWDNMLGE FRKVYEWERG GEREQVGKSY FRLSPYERKL HRLPASFDEE  300
VFEELSQFMG PRMRTSQSRG ASAIASSDDG RSVLSGPRPL PPAPPFKVDE LPLSGFTERA  360
QLPFAEPSIR SVPPLELQDP TDYYIGCLRV PPTVLPGLFE LSWHLQEPLP EEYRFPLRKD  420
VYRDLPAGKE VLFTTTSELL DCRAMVYDVL SSIIRTNPSL SAATATSRDS FIGLWDDCVN  480
RVISKFCSVE MVIIRKPSSS STEPLQDQWP NVTGFVRNFC LWRGEETDQV REGHPDPSSS  540
LVEKLLWTYM DLPYVLGYYA VGYMVTFCAL SRSQDRILRT DLYSVDLSSP SERLKALVPC  600
CRIAGLLPLL ADRCFNTISN VGSYKQFPFS DFERINLRNG SIMEMTPNTV TRSFSNKKKW  660
AAVKEIYDIL DHRIPHSELI CRACEKDLVL VFKPRGCKFK PINCEQLVEA LKYVTKALVA  720
LHDLCFMHRD LGWDKVLRRS DTENEWFVCG FDEAVGAPQI YPHPVAGTDT DARGRHAPEM  780
GRGLHGVKVD VWGVGYLVKT CGLTNVPKML RELETRCLDQ NPEQRPTAAD CYHHLLQVQS  840
ASSGAPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697142.1	0.0	PREDICTED: uncharacterized protein LOC107913165
TrEMBL	A0A0D2QKQ5	0.0	A0A0D2QKQ5_GOSRA; Uncharacterized protein
STRING	Gorai.001G047400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8356	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-07	Trihelix family protein