PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2286
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 247aa    MW: 27408.8 Da    PI: 7.6627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2286genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-1073121454
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                    +e+Er RR+++ + +++Lr+llP+ +    ++K   ++   +Av+YI ++
  Gh_A07G2286  73 VRKEIERERRQQMGKLYQKLRSLLPPeS---IKGKRAASDHMNEAVNYITYM 121
                  5689**********************66...9*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1167134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.76969121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-870125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.51E-670125No hitNo description
PfamPF000102.0E-774121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.003175127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MFPSDQIDGY LYEISDIPHH EDFVRQNLTS GESVEGSHLT RRTGKGEGLK SLAVANNNDA  60
NYAVSANDAK KIVRKEIERE RRQQMGKLYQ KLRSLLPPES IKGKRAASDH MNEAVNYITY  120
MKKRVGELSI KRDKVKKLSN RSALDLGSSS ASSSGISSCV AVHPFRGGVE IMISSGFEDQ  180
SWHLSTFLQA ILEEGLDIVR CVSSQTIEGL LHTVQSEVTD PTQIDLSRLQ TKLNDLISYH  240
DNAGCGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016694699.10.0PREDICTED: transcription factor bHLH118-like
RefseqXP_017648133.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1U8K2A50.0A0A1U8K2A5_GOSHI; transcription factor bHLH118-like
TrEMBLA0A2P5X7C00.0A0A2P5X7C0_GOSBA; Uncharacterized protein
STRINGGorai.001G047300.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17143711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.19e-25bHLH family protein