PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G2280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C3H | ||||||||
Protein Properties | Length: 445aa MW: 49869.2 Da PI: 5.3427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 109 | 131 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gh_A07G2280 109 EDCAYYMKTGLCKFGFNCKFNHP 131 89********************9 PP | |||||||
2 | zf-CCCH | 30.5 | 6.2e-10 | 152 | 175 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gh_A07G2280 152 QECKYYLRTGGCKFGKACRYNHSK 175 58********************95 PP | |||||||
3 | zf-CCCH | 39.2 | 1.1e-12 | 196 | 220 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gh_A07G2280 196 GEKECPYYMRNGSCKYGANCRFNHP 220 6789********************9 PP | |||||||
4 | zf-CCCH | 26.9 | 8.2e-09 | 332 | 358 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Gh_A07G2280 332 PGQPECSYFLKTGDCKFKSNCKYHHPK 358 5789*********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.6e-12 | 379 | 403 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Gh_A07G2280 379 DQSICSYYSRYGICKFGPACKFDHS 403 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 3.27E-6 | 104 | 133 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 109 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-4 | 111 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 150 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 152 | 175 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 154 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.201 | 194 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 196 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.3E-6 | 197 | 223 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 200 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.333 | 331 | 359 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-4 | 331 | 358 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-6 | 333 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 375 | 403 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 377 | 404 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 377 | 405 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 379 | 403 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 381 | 404 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEEEEDKVDV ETQNDVEEEE EDIIENENDD DVKKDEERRT NYPVRPEAED CAYYMKTGLC 120 KFGFNCKFNH PVRRKNQAVK EKDESTEKTN QQECKYYLRT GGCKFGKACR YNHSKQNSSV 180 SPILELNFLG LPIRKGEKEC PYYMRNGSCK YGANCRFNHP DPKLAGACEP PSGYGNGGSV 240 SLQAASQVNM ASWAAPMTLN DSAAYFPIMF SPTQGVPPPN PEWNGYQTTL YPPLERGLHP 300 TPAYVMSNPS TETTAYTHHQ PQMVVDDFPE RPGQPECSYF LKTGDCKFKS NCKYHHPKNR 360 VPKPTPCALS DKGLPLRPDQ SICSYYSRYG ICKFGPACKF DHSIQATPPT VSGLDQPRPF 420 SHSTATEQAG IARSNRADTA VQQSV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744400.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X1 | ||||
Swissprot | Q9STM4 | 1e-135 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A1U8NZV5 | 0.0 | A0A1U8NZV5_GOSHI; zinc finger CCCH domain-containing protein 67-like isoform X1 | ||||
STRING | Gorai.001G061800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-132 | C3H family protein |
Publications ? help Back to Top | |||
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