PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2274
Common NameWRKY54
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 504aa    MW: 54648.1 Da    PI: 5.111
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2274genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30279337259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                   Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  Gh_A07G2274 279 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGNHNHP 337
                  7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-33263339IPR003657WRKY domain
SuperFamilySSF1182908.63E-28271339IPR003657WRKY domain
PROSITE profilePS5081129.631273339IPR003657WRKY domain
SMARTSM007741.0E-36278338IPR003657WRKY domain
PfamPF031061.1E-26280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MAKTSGLSID FDPNYFLIHN PPVLNSFPED TPEDTNKNNN NNNTMFSGTT TTPENMSLRS  60
TVDRFPVKFD CFYDQTRPSF LPSDDDKRRV VGELDFFAEK NDKLVDDADF MHTSDAGLEL  120
NVNIGLNLLT TNTSADQSTM EDKKANNEVA VLRAKLVQMN AENERLKEML IQATENYNTM  180
KIHLCSLMMK NGGKAKEEDE ENKKRNGGII VPRQFIDLGL AVAADADESS SSSPEGKRQR  240
EDSSGGDNKV PRLDVDQSEA AMRKARVSVR ARSEAPMITD GCQWRKYGQK MAKGNPCPRA  300
YYRCTMATGC PVRKQVQRCA EDRTILITTY EGNHNHPLPP SAMSMASTTS SAGRMLVSGS  360
TSSPDGLMNS NLLTTTLLPC SSTMATVSAS TPFPSVTLDL TQSSFSTPPP PYNVANSVAV  420
TAPLVPQVSG QALDNLSKFA GIQMSKDLDR LQQGEQNSIG DTVNAATAAI ATDPSFAAAL  480
AAAITSIIES SQSHPNNGHN SNAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-23265340175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310950.0KF031095.1 Gossypium hirsutum WRKY transcription factor 54 (WRKY54) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016725646.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9XEC31e-122WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A059Q7A60.0A0A059Q7A6_GOSHI; WRKY transcription factor 54
STRINGGorai.001G094300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2479434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-108WRKY family protein