PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G2268
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 508aa    MW: 55412.1 Da    PI: 7.3591
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G2268genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09325372455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gh_A07G2268 325 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 372
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.73E-10319376No hitNo description
SuperFamilySSF474597.07E-17319390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-17321389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6325372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10327377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MENQFFLGAH GPPLDFGQAL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS  60
SPVASNSNLS NESFMIRELI GKLGSIGGNA GEISPQPLIA NSTNTSCYST PLNSPPKLSL  120
PLNTLVKEKL PSLGKSMGMN SSVADFSADP GFAERAAKFS CFGSRSFNGR TSQLRLNDTS  180
SPSPSLSPYR SNPLSSNPKI PRVSSSPSLN AMVIEPLQDR SELSHSQEES SITNGDPSLK  240
PSKGTNSRKR KTVPKAKTNE ISTSPSTNAP KGTESNEKRC KSTDSNGNQN DSIKAEDDAK  300
GNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRREKISER MKLLQNLVPG CNKVTGKALM  360
LDEIINYVQS LQRQVEFLSM KLASVNTRLD FNMDSLMPKE MFESNNSLAH QIFPMDSSAT  420
AIFEQQNPAL HHHHANMSNG TMSQCLVGPL DTSIHPNLNT HLPQIHYFTQ SMPQYPTFCE  480
GDLQTIVEMG LGQNQSREMA LQSEFQGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.226222e-83boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628458.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0B0PBI80.0A0A0B0PBI8_GOSAR; Transcription factor bHLH62-like protein
STRINGGorai.001G103300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-105bHLH family protein