PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G2257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 180aa MW: 20054 Da PI: 6.8867 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 27 | 49 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C++ Fs+ L H++ H Gh_A07G2257 27 YDCTFCKRGFSNAQALGGHMNIH 49 88*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 25 | 53 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.41E-6 | 25 | 54 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 27 | 54 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 29 | 49 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
METDQPAPEN PDKASSDEQG ASPARSYDCT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQPS 60 PTHETTSTQQ SNFDISKIIP SYSHTPTSHG KWRWVLQDDG ADARTDRTSD HIVGSQIRQL 120 PLFDEKPSKS DQNPRNQVQE GLEKGFSSTQ PPLGSELDLE LRLGPEPHDS SPPKTTKKFF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016753099.1 | 1e-132 | PREDICTED: transcriptional regulator TAC1-like | ||||
TrEMBL | A0A1U8PS51 | 1e-131 | A0A1U8PS51_GOSHI; transcriptional regulator TAC1-like | ||||
STRING | Gorai.001G112700.1 | 1e-127 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6991 | 23 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53820.1 | 5e-19 | C2H2 family protein |