PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1966
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 251aa    MW: 28649.1 Da    PI: 7.3948
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1966genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox567e-1866119457
                  -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  + +++ +q+++Le+ Fe  +++   ++ +LAk lgL+ rq+ +WFqNrRa++k+
  Gh_A07G1966  66 KKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 119
                  556899**********************************************95 PP
2HD-ZIP_I/II123.21.3e-3964155192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekk+rl+ +qvk+LE+sFe  +kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L++++++L+++l 
  Gh_A07G1966  64 EKKKRLNMDQVKALEKSFELGNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALQAQNKKLTAQLL 155
                  69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.77E-1948122IPR009057Homeodomain-like
PROSITE profilePS5007116.60160120IPR001356Homeobox domain
SMARTSM003892.6E-1763124IPR001356Homeobox domain
CDDcd000861.15E-1465121No hitNo description
PfamPF000462.9E-1565119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-1967128IPR009057Homeodomain-like
PRINTSPR000311.2E-591100IPR000047Helix-turn-helix motif
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5100116IPR000047Helix-turn-helix motif
PfamPF021839.6E-11120160IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAFPPHAFMF QTLHEDQNHF PSPYSLLPCP PQLFHGGVGK SHQEVHGHGD DDEYSDDDGS  60
HGGEKKKRLN MDQVKALEKS FELGNKLEPG RKLQLAKDLG LKPRQIAIWF QNRRARWKNK  120
QLEKDYDALK KLYQTAKADN DALQAQNKKL TAQLLSLKTK DSNETRIKNE NEGSWCSNGS  180
ENNYDMNLAI RPATTMTQLL HGSSKPSLHC LKLDQVVHQD QSLACHMFNQ DGDEQQGFWP  240
WADQSIKFPL N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112120RRARWKNKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746821.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
RefseqXP_017642633.10.0PREDICTED: homeobox-leucine zipper protein HAT7-like
SwissprotQ8LAT01e-72ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A1U8P6I00.0A0A1U8P6I0_GOSHI; homeobox-leucine zipper protein HAT7-like
TrEMBLA0A2P5YNG90.0A0A2P5YNG9_GOSBA; Uncharacterized protein
STRINGGorai.001G256300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2469634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.12e-67homeobox 3