PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1936 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24734.7 Da PI: 5.0817 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.6e-19 | 86 | 136 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng +r++lg+f++ae Aa a+++a+ +++g Gh_A07G1936 86 SYRGVRKRP-WGKFAAEIRDSTRNG--ARVWLGTFDSAEAAALAYDQAAFSMRG 136 69*******.**********44465..*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.99E-20 | 85 | 145 | No hit | No description |
Pfam | PF00847 | 6.9E-14 | 86 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-37 | 86 | 150 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 86 | 146 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 86 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.893 | 86 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEESWLFQYS NNPELSRFGS AEQFSGSCEW DELLLNFNNP DETIWSDLLG DVEERRKASS 60 ESNNTSIDGG VKEEEVCSEE PKKVKSYRGV RKRPWGKFAA EIRDSTRNGA RVWLGTFDSA 120 EAAALAYDQA AFSMRGPLAT LNFPIETVKE SLQELKHRCD EDKGCSPLVA LKKRYSLRKR 180 SKNKKIKPNA AALRQQQNLL VFEDLGPDFL EQLLSSCE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-28 | 83 | 147 | 2 | 66 | ATERF1 |
3gcc_A | 7e-28 | 83 | 147 | 2 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 184 | LRKRSKNKK |
2 | 178 | 184 | KRSKNKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22780 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746726.1 | 1e-160 | PREDICTED: ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 4e-58 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A1U8P680 | 1e-158 | A0A1U8P680_GOSHI; ethylene-responsive transcription factor 1B-like | ||||
STRING | Gorai.001G253100.1 | 1e-147 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM25071 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 2e-38 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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