PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 303aa MW: 34000.9 Da PI: 6.7916 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.5 | 1.3e-09 | 164 | 211 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Gh_A07G1800 164 SHSLAERVRREKISERMKLLQDLVPGC----NKVIGKAVMLDEIIKYVQSLQ 211 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 8.54E-10 | 158 | 215 | No hit | No description |
SuperFamily | SSF47459 | 7.59E-17 | 158 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.294 | 160 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-17 | 161 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 164 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-10 | 166 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MDNQFSLNAP PFHVEPSLSA SYYLSSAMDI HATELNCSQH CEQPTDYYGL HFHFPLSSMP 60 SQVGGFQGNN NNISPLQGRS KFVTSQNESL LNPNADLEAS KYWNSRKRTK TVETSVSPTI 120 AAKGSERNQE SNEKQSNTNT NTKPLEPPKD YIHVRARRGE ATDSHSLAER VRREKISERM 180 KLLQDLVPGC NKVIGKAVML DEIIKYVQSL QRQVEFLSMK LASVNSRLDF KLDSVMSEDI 240 FQSNNNFANP ISTIDSWASA IFGQQQQNLA LHSNVSNGTM TQCSVEPMDT AIWPQLQHPF 300 TSN |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616874 | 3e-89 | JX616874.1 Gossypium hirsutum clone NBRI_GE61821 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645876.1 | 0.0 | PREDICTED: transcription factor bHLH62-like | ||||
Swissprot | Q9SRT2 | 2e-60 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A2P5YSM1 | 0.0 | A0A2P5YSM1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G230000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24586 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07340.1 | 1e-62 | bHLH family protein |
Publications ? help Back to Top | |||
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