PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G1154

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ARR-B

Protein Properties

Length: 487aa MW: 55245.4 Da PI: 5.9122

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G1154	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	22.2	3.1e-07	218	238	1	21
G2-like 1 kprlrWtpeLHerFveaveqL 21 kpr+ Wt+eLH+ Fv av+qL Gh_A07G1154 218 KPRVIWTQELHDIFVIAVNQL 238 79******************9 PP
2	G2-like	23.5	1.3e-07	266	294	26	51
G2-like 26 kAtPkti...lelmkvkgLtlehvkSHLQ 51 +A+Pk+i +++m+v gL++++++SHLQ Gh_A07G1154 266 EAVPKKIlerMQAMNVTGLSRANIASHLQ 294 69***33335789************ PP
3	Response_reg	69.7	1.2e-23	36	142	1	107
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+++ + +l+++l+k y ev++++ ++ al+ll+e + +D++l+D+ mp++dGl+ll+ i e +lp++++++ + + + + + Ga Gh_A07G1154 36 VLVVDDNRTCLLVLETMLRKLSY-EVTTCQLARHALALLREDKnrFDIVLCDLHMPELDGLKLLEIIGLEM-DLPVVMMSSDDGKGVIMKGIIHGAC 130 89*******************.***********887778****************996644.8******************** PP EEEESS--HHHH CS Response_reg 96 dflsKpfdpeel 107 d+l+Kp+++e++ Gh_A07G1154 131 DYLVKPVQMEAV 142 ****999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	1.85E-32	33	165	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	9.0E-37	33	187	No hit	No description
SMART	SM00448	1.9E-26	34	146	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	39.899	35	150	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.6E-20	36	142	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	3.22E-24	37	149	No hit	No description
SuperFamily	SSF46689	1.09E-7	215	295	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-15	216	294	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MMYVVGIKVN ATTYTVCFFN AMDGGFDGDF PAGLKVLVVD DNRTCLLVLE TMLRKLSYEV 60 TTCQLARHAL ALLREDKNRF DIVLCDLHMP ELDGLKLLEI IGLEMDLPVV MMSSDDGKGV 120 IMKGIIHGAC DYLVKPVQME AVRLIWQHVV RKRQRALEDF QQLRGNIHAT GRTLLLKQAK 180 NAVDQMPARE RRTLKRAREN EDEDDEGELS EEVTTAKKPR VIWTQELHDI FVIAVNQLRQ 240 RMNNSLLPYL YHSLMEINML ITCLPEAVPK KILERMQAMN VTGLSRANIA SHLQVNISYI 300 YTVFKNHIII NEVTYNLQKY RLHLRKGGGQ PLADNRDVNL NPSIGQASSF NQFNLQFQQP 360 TAIGSSCNQL PMQNLMITPQ PCTINDSVVP DSTQCFPTEL STNDLSQPNL LFQNDVPTSN 420 VEHLYRNVGV NVSELSNPIS SVDDSSVDQL IYEPSFLVRQ YDPEDFFHGG FPRSDSYVSV 480 HCNLIFL

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MMYVVGIKVN ATTYTVCFFN AMDGGFDGDF PAGLKVLVVD DNRTCLLVLE TMLRKLSYEV  60
TTCQLARHAL ALLREDKNRF DIVLCDLHMP ELDGLKLLEI IGLEMDLPVV MMSSDDGKGV  120
IMKGIIHGAC DYLVKPVQME AVRLIWQHVV RKRQRALEDF QQLRGNIHAT GRTLLLKQAK  180
NAVDQMPARE RRTLKRAREN EDEDDEGELS EEVTTAKKPR VIWTQELHDI FVIAVNQLRQ  240
RMNNSLLPYL YHSLMEINML ITCLPEAVPK KILERMQAMN VTGLSRANIA SHLQVNISYI  300
YTVFKNHIII NEVTYNLQKY RLHLRKGGGQ PLADNRDVNL NPSIGQASSF NQFNLQFQQP  360
TAIGSSCNQL PMQNLMITPQ PCTINDSVVP DSTQCFPTEL STNDLSQPNL LFQNDVPTSN  420
VEHLYRNVGV NVSELSNPIS SVDDSSVDQL IYEPSFLVRQ YDPEDFFHGG FPRSDSYVSV  480
HCNLIFL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017613816.1	0.0	PREDICTED: two-component response regulator ARR2-like
TrEMBL	A0A2P5XNW7	0.0	A0A2P5XNW7_GOSBA; Uncharacterized protein
STRING	Gorai.001G142000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22318	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16857.1	8e-70	response regulator 1