PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G1097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 521aa MW: 58878.3 Da PI: 8.3868 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53 | 5.9e-17 | 20 | 75 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+ Gh_A07G1097 20 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 75 89****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 4 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.726 | 16 | 76 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-15 | 17 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.0E-14 | 18 | 80 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-14 | 20 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.10E-16 | 20 | 76 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 521 aa Download sequence Send to blast |
MGDSGQVQIE EDKVSLDVNK KRAVKTPAQV IVLENFYKEE RFPSDEMKAK LAVQLGLTQK 60 QISSWFCHRR LKDKRRDDCY ANGQHDYSSG VIQDHVSGLR QDSCGSIKQG DYRYVDLREV 120 ESRIIHDQGF PAADLTYERR SHQYPYGVQM EDPSSESSLS LHDQLFLKVG NRYDMHISAK 180 PTQNGAIVQT NSSSKSIGYK PSGYLKVKGQ SENPVITAVK RQMGRHYRED GPVLGIQFDP 240 LPPGAFEFPS SHPVNEPINI RDSRQPHCLD ISGVMKQSKP KIINEVHNTM LSFQDSYMEG 300 ANFNTVHGSK SQDWRCHHQP KYKPSFSCSN PFPYKDFPLD IYKGYADKPA ISDCKRSWMS 360 SKLVVERMVP DSCSNHPGPY GRKITNEQKI PGLHDAHHIH MDPKAKNLPK TSSFIRACSE 420 SLGNERGPFA RMEKVENVVG EWKLRKDYPV RVKIDATNEL SVAKRVDLEF PQKDFVANAS 480 HARLHLLTNP SKGPSMDVPS CFSGDETAET SLSSRIEDAY G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 68 | 76 | RRLKDKRRD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644329.1 | 0.0 | PREDICTED: uncharacterized protein LOC108484940 isoform X1 | ||||
TrEMBL | A0A1U8NY75 | 0.0 | A0A1U8NY75_GOSHI; uncharacterized protein LOC107953181 isoform X1 | ||||
STRING | Gorai.001G134800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24782 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 8e-75 | HB-other family protein |