PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 521aa    MW: 58878.3 Da    PI: 8.3868
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1097genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox535.9e-172075257
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +kR   t+ q+ +Le++++++r ps e++++LA +lgLt++q++ WF+ rR k+k+
  Gh_A07G1097 20 KKRAVKTPAQVIVLENFYKEERFPSDEMKAKLAVQLGLTQKQISSWFCHRRLKDKR 75
                 89****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-17476IPR009057Homeodomain-like
PROSITE profilePS5007115.7261676IPR001356Homeobox domain
SuperFamilySSF466892.27E-151776IPR009057Homeodomain-like
SMARTSM003891.0E-141880IPR001356Homeobox domain
PfamPF000461.6E-142075IPR001356Homeobox domain
CDDcd000866.10E-162076No hitNo description
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MGDSGQVQIE EDKVSLDVNK KRAVKTPAQV IVLENFYKEE RFPSDEMKAK LAVQLGLTQK  60
QISSWFCHRR LKDKRRDDCY ANGQHDYSSG VIQDHVSGLR QDSCGSIKQG DYRYVDLREV  120
ESRIIHDQGF PAADLTYERR SHQYPYGVQM EDPSSESSLS LHDQLFLKVG NRYDMHISAK  180
PTQNGAIVQT NSSSKSIGYK PSGYLKVKGQ SENPVITAVK RQMGRHYRED GPVLGIQFDP  240
LPPGAFEFPS SHPVNEPINI RDSRQPHCLD ISGVMKQSKP KIINEVHNTM LSFQDSYMEG  300
ANFNTVHGSK SQDWRCHHQP KYKPSFSCSN PFPYKDFPLD IYKGYADKPA ISDCKRSWMS  360
SKLVVERMVP DSCSNHPGPY GRKITNEQKI PGLHDAHHIH MDPKAKNLPK TSSFIRACSE  420
SLGNERGPFA RMEKVENVVG EWKLRKDYPV RVKIDATNEL SVAKRVDLEF PQKDFVANAS  480
HARLHLLTNP SKGPSMDVPS CFSGDETAET SLSSRIEDAY G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16876RRLKDKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644329.10.0PREDICTED: uncharacterized protein LOC108484940 isoform X1
TrEMBLA0A1U8NY750.0A0A1U8NY75_GOSHI; uncharacterized protein LOC107953181 isoform X1
STRINGGorai.001G134800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2478234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.18e-75HB-other family protein