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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_A07G1091 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
SRS |
| Protein Properties |
Length: 344aa MW: 35830.6 Da PI: 8.2824 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_A07G1091 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 214.7 | 2.2e-66 | 132 | 291 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstklssaeskke 99
s +++CqdCGnq+kkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrerq ++aa+++ a s+ +++ +k++r +++++++ +t++s++++ ++
Gh_A07G1091 132 SSGTTCQDCGNQSKKDCSHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMAAAPTTACAGSSgSTSGAKKPRLV-TSQTTTTPHTSTSNTTP-RS 227
56679**********************************************99999988887777466667777765.66677777777777765.56 PP
DUF702 100 letss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
l+tss lP +v+++avf+cvrv++v+dge+e+aYq++v+igGhvfkG+LydqG+e
Gh_A07G1091 228 LDTSSshqdagfketLPGQVRAPAVFKCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 291
666666899*****************************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MGMVGLRDFV VVAPASFNHH HHHHHNHAQD PIIGNDQING QNAATALGVG VGVFPLLTAS 60
PCLAPQNMED SDLVNNSGRN KLSGMQLWQN QTSPNYLKKQ SSILDNNNSS MNLIQTSGGG 120
GMGGGSGGSG TSSGTTCQDC GNQSKKDCSH RRCRTCCKSR GFDCPTHVKS TWVPAARRRE 180
RQLMAAAPTT ACAGSSGSTS GAKKPRLVTS QTTTTPHTST SNTTPRSLDT SSSHQDAGFK 240
ETLPGQVRAP AVFKCVRVTA VEDGEDEYAY QAVVKIGGHV FKGFLYDQGV EGRDGFPNIS 300
ELHLGGGSGT NGGSSSSPVL DPSQVYAATG GGLLGGSTYG NPIN
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269|PubMed:7647564}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269|PubMed:7647564}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-81 | Lateral root primordium (LRP) protein-related |
