PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G1071
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 218aa    MW: 24936.4 Da    PI: 10.2705
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G1071genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC40.65.4e-131122001199
        NF-YC  11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  e++++ k  ++P+ rik+i+k+++    +s ++  l+ ka elf+ ++    +  + + ++++l    ++++v + + +dfl d vp++
  Gh_A07G1071 112 EEEEEAKVCRFPMNRIKRIIKTEDSHMAVSQDVVFLVNKAAELFLEKFCEDGYKCSIKDRKKSLSYKHLSTVVHEQKRYDFLSDYVPQK 200
                  6677889999***************9*************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.37E-17118201IPR009072Histone-fold
PfamPF008084.1E-14121184IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.6E-22122199IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MASSSKKPKE QNKNKKKHKE KSNRTADKDA KKSIKKPEKK ASASKIPTKS KPKPELKPDK  60
SKNKSSNGIP VKSQVIADPS SSSESEPEEN RNNYHKNVKP DSKRKRKEEV DEEEEEAKVC  120
RFPMNRIKRI IKTEDSHMAV SQDVVFLVNK AAELFLEKFC EDGYKCSIKD RKKSLSYKHL  180
STVVHEQKRY DFLSDYVPQK IKAEDALKVM NLAETGEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.208540.0boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743952.11e-155PREDICTED: DNA polymerase epsilon subunit C-like
TrEMBLA0A1U8NYB81e-153A0A1U8NYB8_GOSHI; DNA polymerase epsilon subunit C-like
STRINGGorai.001G131300.11e-108(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.14e-33nuclear factor Y, subunit C10