PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A07G0952 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 375aa MW: 40463.3 Da PI: 8.5593 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00064 | 208 | 230 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Gh_A07G0952 208 YECKTCNRSFPSFQALGGHRASH 230 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00025 | 286 | 308 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Gh_A07G0952 286 HECSICGSEFSSGQALGGHMRRH 308 78********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.62E-9 | 207 | 230 | No hit | No description |
Pfam | PF13912 | 2.8E-13 | 207 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.72 | 208 | 235 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.06 | 208 | 230 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 210 | 230 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.8E-4 | 281 | 308 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.62E-9 | 281 | 308 | No hit | No description |
Pfam | PF13912 | 1.4E-11 | 286 | 310 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 286 | 308 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.014 | 286 | 313 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 288 | 308 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MVGIFVTLPA KLCARKVKVS VCTNIIIQTP TTTLIILHYI RLPSLSPSFL ISLPLLLLSS 60 VRSLASNFLL FFLTLYTLLL AGAGVMDVQA HQEEFVGSND HQALVIKGKR TKRQRPSSPF 120 GVTVTCSSSS ASIGGGGVAE EYNSISSPTT SGEIHESTEE EEDMANCLIM LAQSDGPRKR 180 MDEGKFKVGS RKLSEIATTT NKAGFFVYEC KTCNRSFPSF QALGGHRASH KKPKATMAED 240 KKPLVLAVKD DKHVDQELQS ETPLLALQVS NNNSKGCQVN KGNKIHECSI CGSEFSSGQA 300 LGGHMRRHRA AAATTASNQV VVSVGNGDGI KPRNILSLDL NLPAPEDDLR DSKFQFGAPQ 360 QAIVFSTPAL VDCHY |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.12625 | 0.0 | boll |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017642254.1 | 0.0 | PREDICTED: zinc finger protein ZAT5-like | ||||
Swissprot | Q681X4 | 8e-68 | ZAT5_ARATH; Zinc finger protein ZAT5 | ||||
TrEMBL | A0A2P5WU24 | 0.0 | A0A2P5WU24_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G117100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5862 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28200.1 | 1e-61 | C2H2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|