PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 785aa MW: 88512.2 Da PI: 4.9871 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 373.9 | 2.1e-114 | 405 | 779 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs++d++ a +lL++++e++sp gd +qRla+yf+++L+ar+ +s++ + + + ++++++ ++ l+++k + ++P+ k+ + a Gh_A07G0907 405 LRTLLILCAQAVSANDHRTAGELLKQIKENSSPLGDGTQRLAHYFANGLEARMDGSGTVMQNFYMSLASKKTTAADMLKSYKGYLSACPFKKLPIFFA 502 5789***************************************************999888888888888888************************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I+ +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+sg +e++e+tg+rLa+++e+++vpfe+++++a+++e++++e++ Gh_A07G0907 503 NKMIYYMTEKASALHIVDFGILYGFQWPVLIQHLSNRPGGPPKLRITGIELPQSGfrPTERIEATGRRLANYCERFNVPFEYKAIAAQNWENIRIEDI 600 ******************************************************9******************************************* PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E+laVn+ ++ ++llde+++++ +r++vLkl+++++P+++v++ + ++ns+ F++rf eal + s++fd+++++lpr++ +r + E el g+ Gh_A07G0907 601 KINNNEVLAVNSLFRFENLLDETAEVDCPRNAVLKLIRRMNPDIFVHSIINGSYNSPFFVTRFREALFHLSSVFDMFDNTLPRDEPARLMFESELYGQ 698 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e+vnvvaceg +r++r et+++W+ r+++aGFkp+pl+++ +++ ++ l+ + + + ++e++++l++gWk+r L++ S+W Gh_A07G0907 699 EAVNVVACEGPARVQRPETYKQWQIRMTRAGFKPLPLNQELMTKLRHKLKAWYHKDFVIDENNHWLLQGWKGRILYASSCW 779 *****************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.78 | 379 | 760 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-112 | 405 | 779 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MEPKFTEFSD YINGFSVEDL DDTFQLNSGQ YSNGTIGFEF NDPSPDLNVL NMNVAVAPSE 60 PDPVTFVQPL TVSTDGSSIS TSTGWSPEGE SLSPSDDNDS TDPVLKYITQ MLMEENMEEP 120 HMFNNYFALK DTEKSLYEVL VEPYPQTSEP QPLLNLNLEA PESNLSGSTN GHSSANIGTN 180 YGTGNYSDHQ VVGEVWESPS SLSQPPLTGD YDFQPALQRP SSQVSVKSTN SLSSPGNRTM 240 ESSISKLLAQ NIFNDKESVL QFQRGFEEAS KFLPSSNQLM IGLESNAFPT GQKGKVPNDV 300 VKVGEDESEN PHERLRGRKN HGRDLEDLEE ERSNKQSATY TDESELSEMF DKVLLYPVGQ 360 FICCNDNENV QHTENKALRR KEQSNGSSAG KPRSKKQGKK ETVDLRTLLI LCAQAVSAND 420 HRTAGELLKQ IKENSSPLGD GTQRLAHYFA NGLEARMDGS GTVMQNFYMS LASKKTTAAD 480 MLKSYKGYLS ACPFKKLPIF FANKMIYYMT EKASALHIVD FGILYGFQWP VLIQHLSNRP 540 GGPPKLRITG IELPQSGFRP TERIEATGRR LANYCERFNV PFEYKAIAAQ NWENIRIEDI 600 KINNNEVLAV NSLFRFENLL DETAEVDCPR NAVLKLIRRM NPDIFVHSII NGSYNSPFFV 660 TRFREALFHL SSVFDMFDNT LPRDEPARLM FESELYGQEA VNVVACEGPA RVQRPETYKQ 720 WQIRMTRAGF KPLPLNQELM TKLRHKLKAW YHKDFVIDEN NHWLLQGWKG RILYASSCWV 780 PAEES |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 7e-47 | 412 | 781 | 26 | 380 | Protein SCARECROW |
5b3h_A | 6e-47 | 412 | 781 | 25 | 379 | Protein SCARECROW |
5b3h_D | 6e-47 | 412 | 781 | 25 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.371 | 0.0 | boll| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016728935.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Refseq | XP_016728937.1 | 0.0 | PREDICTED: scarecrow-like protein 34 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1U8MQ35 | 0.0 | A0A1U8MQ35_GOSHI; scarecrow-like protein 34 | ||||
STRING | Gorai.001G111600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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