PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 764aa MW: 85187.4 Da PI: 5.9548 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 380.6 | 1.9e-116 | 390 | 760 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs +d + a++l++++++++sp+gd qRla +f+ AL+arla++++++y++l++++ts ++ l+a++++ ++P++k++ + a Gh_A07G0906 390 LRTLLILCAQAVSGDDGATAKELIKQIRQHSSPTGDGSQRLALCFVDALEARLAGTGTHIYSSLAVKRTS---AADMLKAYQVYLSACPFMKMAIFFA 484 5789***************************************************************999...9************************ PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I + +e+++++H+iDf+i +G+QWpaL++ La+Rp+gpp+lRiTg++ p++g +e+++etg+rLa+++e+ +vpfefn+ va+++e++++e+L Gh_A07G0906 485 NNTIFKVAEKATTLHVIDFGIFYGFQWPALIHCLANRPGGPPKLRITGIEFPRPGfrPAEAVQETGHRLARYCERYNVPFEFNA-VAQKWETIQTEDL 581 ******************************************************9*9***************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 +++++E++aVn+ ++ ++llde+v l+s+rd vL+l+++++P+++v++ + ++n++ F++rf eal ++salfd+ e+++++e++ r+++E+++ ++ Gh_A07G0906 582 KINSNEVIAVNCLFRFKNLLDETVVLNSPRDIVLNLIRKINPDIFVHSIVNGSYNAPFFVTRFREALFHFSALFDMSETNISQEDNLRTMLEQKFYRQ 679 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ei+n+vaceg+er+er e +++W+ r +aGF+++pl+ + +k+++ +++++ ++v+ + ++++gWk+r +++ SaW Gh_A07G0906 680 EIMNIVACEGTERVERPEAYKQWQVRSVRAGFTQLPLDPELMKKVRGKVKECYHSDFMVDVDGRWMLQGWKGRIIYASSAW 760 *****************************************************777************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.702 | 364 | 741 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.4E-114 | 390 | 760 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 764 aa Download sequence Send to blast |
MGSEFNSING FKFHNGFSMP YSNGYPKSDN SNGVRSNDPS LDLSSVGAPF LPSLGLNNSS 60 TYASFFSTDK EGDSSSPSDD GDFSDTVLKY ISQVLLEEDM EEKPCMFHDS LALQAAEKSL 120 YEVLGESYPP RNRAPLCSGH SVESSPDDCS FRTSGDHSTY TGSSSNTSKS IDSRWNGDFG 180 ENNDKPSLFE ASVPDNFVFQ SSVNSFSQSS ARFQKGTASN GKGLVGSNSN ELAIPNYFSE 240 SELALHFKKG VEEASKFLPK GNQLTIDFTS NAWTAELNQK APVTVVEMES DWKEYSPYRL 300 TGKKNHDRED EDFEEGRNNK QSAVSGDESE LSDMFDKVLI CAGRNEKSPA CGADETPRNG 360 PSKLRPKEQT NESGKARGKK QGKKKEVVDL RTLLILCAQA VSGDDGATAK ELIKQIRQHS 420 SPTGDGSQRL ALCFVDALEA RLAGTGTHIY SSLAVKRTSA ADMLKAYQVY LSACPFMKMA 480 IFFANNTIFK VAEKATTLHV IDFGIFYGFQ WPALIHCLAN RPGGPPKLRI TGIEFPRPGF 540 RPAEAVQETG HRLARYCERY NVPFEFNAVA QKWETIQTED LKINSNEVIA VNCLFRFKNL 600 LDETVVLNSP RDIVLNLIRK INPDIFVHSI VNGSYNAPFF VTRFREALFH FSALFDMSET 660 NISQEDNLRT MLEQKFYRQE IMNIVACEGT ERVERPEAYK QWQVRSVRAG FTQLPLDPEL 720 MKKVRGKVKE CYHSDFMVDV DGRWMLQGWK GRIIYASSAW VPAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-53 | 379 | 764 | 7 | 381 | Protein SCARECROW |
5b3h_D | 3e-53 | 379 | 764 | 7 | 381 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016728926.1 | 0.0 | PREDICTED: scarecrow-like protein 33 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A1U8MQ12 | 0.0 | A0A1U8MQ12_GOSHI; scarecrow-like protein 33 | ||||
STRING | Gorai.001G111500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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