PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0807
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 528aa    MW: 58752.9 Da    PI: 5.5732
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0807genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.8e-08465519146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE++ l+++v+++ +       W++I ++       +R + ++k++w +
      Gh_A07G0807 465 RLHWTAEEEDMLKELVHKFSSQvnkniPWRKILEHGRpvfhSTRIPVDLKDKWKN 519
                      789********************************99****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.22E-7118173IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.7E-6120172IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.7E-5122168IPR001965Zinc finger, PHD-type
PROSITE patternPS013590123167IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.706460525IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-10461528IPR009057Homeodomain-like
SuperFamilySSF466893.12E-8463522IPR009057Homeodomain-like
SMARTSM007171.6E-5464523IPR001005SANT/Myb domain
PfamPF002492.1E-6466520IPR001005SANT/Myb domain
CDDcd116604.18E-8468521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGRKVGVVKS GIRNSIPSSN PSTVSLPLRC QHEADGDRHV DGKNHGAYDD NGSGQDKDNN  60
SSGDANADAD GMGNGNVNGH ARVDVDDKVN DRDEEKGDDD VARCVRGKHA DCIVVDWLNG  120
EYCFECNSGS GQVLVCSEKG CPVALHEACM TWRPIFDDMG KFYCPYCLYK KEVARFKDLT  180
TEAMLARNEL SNFICLRRDS RNKEREGETL SMKGASVSTM ATEVSCGDCR NGLNDDGKET  240
RHHSQDETRG VDVIRKEQSN EQNISRAHGF ENVRNGEMME EVEEDSSDSG GDDIGEGQQQ  300
KRPSSSSGVR TVEETQGVAS IRKEKSDEQN LPMANGFENV GNRERMEEDI EISSDNGNAE  360
IGDDRQQLRP SSSKVPVIES FEFVSPNLDT ETLVTHQKRD KQRANKAQPL KVVSSEKSSL  420
QPSTSAKNMN VNQERNTVAV KISEEGAKST KRPLLPVLGT EKRRRLHWTA EEEDMLKELV  480
HKFSSQVNKN IPWRKILEHG RPVFHSTRIP VDLKDKWKNI VAKEISKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461465KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016721811.10.0PREDICTED: uncharacterized protein LOC107933998 isoform X1
RefseqXP_016721812.10.0PREDICTED: uncharacterized protein LOC107933998 isoform X1
TrEMBLA0A1U8M4S40.0A0A1U8M4S4_GOSHI; uncharacterized protein LOC107933998 isoform X1
STRINGGorai.001G100000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1539557