PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 332aa MW: 38377 Da PI: 8.4601 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.5 | 4.7e-48 | 19 | 167 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrFhPtdeelv +yL++kve+k++++ e ik++diy+++PwdLpk + +ekewyf++kr +ky+++ r+nr+t sg+Wkatg dk+++s+++++ Gh_A07G0739 19 LPGFRFHPTDEELVGFYLRRKVEKKPISI-ELIKQIDIYQYDPWDLPKVSNVGEKEWYFYCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSSTKE 115 59***************************.89***************8888899***************************************83333 PP NAM 100 .......................vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lv+y+g a kg+ktdW+mhe+rl Gh_A07G0739 116 phhhhhhhhhqhdrhqhqhlctcIGLKKSLVYYRGCAGKGTKTDWMMHEFRL 167 555666777788899999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 48.854 | 18 | 191 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.05E-50 | 19 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-24 | 20 | 167 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 332 aa Download sequence Send to blast |
MEDSIDDNKK KRNGEEIKLP GFRFHPTDEE LVGFYLRRKV EKKPISIELI KQIDIYQYDP 60 WDLPKVSNVG EKEWYFYCKR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS SSTKEPHHHH 120 HHHHHQHDRH QHQHLCTCIG LKKSLVYYRG CAGKGTKTDW MMHEFRLPPN GNHTTNAQEA 180 EVWTLCRIFK RTPPNNKYPP TTVASTAAWK FSATTTIKQN GTDYPTTCRS SMEDVSQSQN 240 SYDKCKSLCD TVIQQKGNKP DMDEVDARNY FLYGGTLPLS TQQAPFTSTN FPTFCNHPNG 300 DVDVFSNGNL DELRPVVEVA LEPYTSHAFD YT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-46 | 20 | 191 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-46 | 20 | 191 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-46 | 20 | 191 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-46 | 20 | 191 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-46 | 20 | 191 | 22 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-46 | 20 | 191 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-46 | 20 | 191 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016703992.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
Swissprot | Q9SK55 | 2e-85 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8KNE9 | 0.0 | A0A1U8KNE9_GOSHI; transcription factor JUNGBRUNNEN 1 isoform X1 | ||||
STRING | Gorai.001G091900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 6e-88 | NAC domain containing protein 42 |