PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A07G0698 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23586.5 Da PI: 9.1247 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll+++++++G g W+ ++++ g++R++k+c++rw++yl Gh_A07G0698 10 KGAWTEEEDLLLKKCIEKYGEGKWHQVPARAGLNRCRKSCRLRWLNYL 57 79********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.468 | 5 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-23 | 7 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-23 | 7 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-17 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-12 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-13 | 60 | 106 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0016 | 62 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 11.479 | 62 | 105 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 208 aa Download sequence Send to blast |
MEGSSLRVRK GAWTEEEDLL LKKCIEKYGE GKWHQVPARA GLNRCRKSCR LRWLNYLKPD 60 IKRGAFADDE VDLMIRLHNL LGNRLPGRTA NDVKNYWNTY LRKKMVKPSP KLNIEVIKPR 120 PLNLSVPLDK NNNNNNNDSD HAAASTPASN SLVSSDSGNN SSYAFSNDNN EIMWWKNMLM 180 NEDEPQGFGN NINHSASGDQ FINEALGV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-19 | 10 | 105 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-19 | 10 | 105 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-19 | 10 | 105 | 58 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-19 | 10 | 105 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-19 | 10 | 105 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Ghi.20945 | 2e-93 | boll |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC491877 | 2e-95 | KC491877.1 Gossypium arboreum transcription factor AN2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017647923.1 | 1e-134 | PREDICTED: transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 1e-52 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A1U8K0Z0 | 4e-78 | A0A1U8K0Z0_GOSHI; PAP1D-T | ||||
STRING | Gorai.001G087200.1 | 2e-78 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G66370.1 | 2e-53 | myb domain protein 113 |
Publications ? help Back to Top | |||
---|---|---|---|
|