PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0629
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 432aa    MW: 47559.4 Da    PI: 8.677
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0629genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.3e-16231276555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Gh_A07G0629 231 HNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 276
                  9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-19224286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.7E-19225285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.695226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13231276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.98E-17231280No hitNo description
SMARTSM003531.2E-17232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MSHCIVPNWN LKNQRRRRQQ VEEEEEETKR SSFHMFNPCN NINQNLVPVS NHQVADLTWQ  60
YGQQLAMHGF SGFLPTAPTK PTCRSNDTLE SIVHQATYHN HDETPTNTSS IAASSGGNRS  120
ESSSRLPPVS VAARLTKKRA QPISDSDQCR KHNISCGIQK DKADRSECGS DTFYKIDNDA  180
TMVTWGSHDE SLQSLKTKTT DGDSGSHDGS ESRDETGGSH PTRRSRAAAI HNLSERKRRD  240
RINQKMKALQ KLVPNASKTD KASMLDEVIE YLKQLQAQVQ VMSMRSLPPM MLMPLGLHHH  300
QHLQMSLLGR IMAGMGVNHA LGMGMGLLDI NAATPPNASQ SLPSLLHLPP PFLATALPPM  360
IPSRATATAA AQSNPNASSS DSIPLPDPSC AFLTQSMNME LYSKMAALYQ SQMNRTTETA  420
SSPSRSNNIK QD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734TKRSSFHM
2234239ERKRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5813513e-68JX581351.1 Gossypium hirsutum clone NBRI_GE13962 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744269.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1U8P2330.0A0A1U8P233_GOSHI; transcription factor UNE10-like
STRINGGorai.001G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.19e-35bHLH family protein