PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0574
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 418aa    MW: 44519.9 Da    PI: 9.1938
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0574genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.57.7e-41902342105
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  ++k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s +          
  Gh_A07G0574  90 PPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSVPtqlrssgfns 187
                  789******************************************************************99988888888888666665555555556 PP

          TCP  89 ..............................kaaksaakskksqksaa 105
                                                 ++ ++ak++ ++++++
  Gh_A07G0574 188 nfsmqqrrslfpgiglettptflnlqsssnLNSMFQAKQELRDHNSS 234
                  66666666666666666666666654444433333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.0E-4394262IPR005333Transcription factor, TCP
PROSITE profilePS5136927.92396150IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEGGGSDDHQ LHHHHHHHHH RQQQQHRPTF PFQLLEKKED DNQPCSSSSS PPFPSLVPPS  60
SSSSSSADQP NTSRSISSLQ ISPEPFKKPP PKRTSTKDRH TKVDGRGRRI RMPALCAARV  120
FQLTRELGHK SDGETIEWLL QQAEPAVIAA TGTGTIPANF TSLNISLRSS GSTMSVPTQL  180
RSSGFNSNFS MQQRRSLFPG IGLETTPTFL NLQSSSNLNS MFQAKQELRD HNSSSLEISA  240
NEENSLGRKR RPEQDLSSQH QMGSYLLQSS TGVIPAATHG HIPANFWMVT NSNNQVMSGD  300
PIWTFPSVNS SALYRGTMSS GLHFMNFPAP MALLPGQQLG SSGVTSGAAA AAGGGGSTGI  360
SAEGHLNILA GLNPYRQVSE SQASGSHSNN DSGGGGGAGG GRSAGGGDNR HDATSHQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399406GGRSAGGG
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular tissues of the embryo (PubMed:17953649). Expressed in young proliferating tissues (PubMed:21668538). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276791e-128HQ527679.1 Gossypium herbaceum clone NBRI_A_EYI1BW401A35IF simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712982.10.0PREDICTED: transcription factor TCP14-like
SwissprotQ93Z001e-66TCP14_ARATH; Transcription factor TCP14
TrEMBLA0A1U8LED40.0A0A1U8LED4_GOSHI; transcription factor TCP14-like
STRINGGorai.001G072200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39152757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47620.16e-64TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]