PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0502
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 221aa    MW: 25120 Da    PI: 8.8142
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0502genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-164392255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y GVr+++ +grWvAeI+  s   ++ r +lg+f+ +eeAa a+++a+  l+g
  Gh_A07G0502 43 RYLGVRQRP-SGRWVAEIKNSS---QKLRLWLGTFDKPEEAALAYDNAAMVLRG 92
                 689******.7******98832...46**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.8E-3143106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-2743100IPR001471AP2/ERF domain
PfamPF008477.2E-124392IPR001471AP2/ERF domain
CDDcd000185.51E-2943101No hitNo description
PROSITE profilePS5103219.65143100IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1943101IPR016177DNA-binding domain
PRINTSPR003675.4E-74455IPR001471AP2/ERF domain
PRINTSPR003675.4E-76682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MVSQQDQSPN KNQTSIEPHE AQTMAENSEK RSNKKVINNG RRRYLGVRQR PSGRWVAEIK  60
NSSQKLRLWL GTFDKPEEAA LAYDNAAMVL RGNNAKTNFQ YEGNLNLIGK VNINPRVYQL  120
LQLTIMKNHA RSALRFIKGK RMDPVDVDGF DTIVEETIFC DDNHHHHDHH DHHDHDEGGN  180
NNNNKLCKVS LGNSKVYSSV VVAPSFCSSS IDQQGQKENN M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-14431061478Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168571e-142JX616857.1 Gossypium hirsutum clone NBRI_GE61800 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713054.11e-165PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A1U8LIN51e-163A0A1U8LIN5_GOSHI; ethylene-responsive transcription factor ERF091-like
STRINGGorai.001G064900.11e-136(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17770810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-24related to AP2 11