PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0411 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ARF | ||||||||
Protein Properties | Length: 885aa MW: 98707.9 Da PI: 6.6212 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 187 | 288 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++g++W++++i+r++++r++l++GW+ +v++++L +gD ++F + +++el Gh_A07G0411 187 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVYVSSKRLVAGDAFIFL--RGENGEL 281 99*****************************7333.34459************************************************..449999* PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ Gh_A07G0411 282 RVGVRRA 288 ****996 PP | |||||||
2 | Auxin_resp | 118.7 | 4.6e-39 | 313 | 395 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha tk++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp +W++SkWr+Lk Gh_A07G0411 313 AWHAYMTKTIFTVYYKPRTSPAEFIVPFDQYMESMKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKKWQDSKWRCLK 395 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-40 | 181 | 316 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-40 | 183 | 302 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.80E-21 | 185 | 287 | No hit | No description |
PROSITE profile | PS50863 | 11.448 | 187 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-20 | 187 | 288 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-21 | 187 | 289 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.8E-36 | 313 | 395 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.4E-5 | 751 | 798 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.92E-13 | 756 | 842 | No hit | No description |
PROSITE profile | PS51745 | 24.764 | 762 | 846 | IPR000270 | PB1 domain |
Pfam | PF02309 | 4.3E-7 | 808 | 847 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MTNTEVAMKG NCVNGRGGES FSSGYSEPND GRNTVEGQNG HSTRQAPATG VFMQFLAFVV 60 FVVDFWLFLM HVFLIDPESA LYNELWHACA GPLVTVPREQ DRVFYFPQGH IEQVEASTSQ 120 VADEQMPVYN LPSKILCRVI NVQLKAEPDT DEVFAQVTLL PEPNQDENTV NKEPPAPQPP 180 RFHVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSR QPPTQELVAK DLHGNEWRFR 240 HIFRGQPRRH LLQSGWSVYV SSKRLVAGDA FIFLRGENGE LRVGVRRAMR QQGNVPSSVI 300 SSHSMHLGVL ATAWHAYMTK TIFTVYYKPR TSPAEFIVPF DQYMESMKNN YSIGMRFKMR 360 FEGEEAPEQR FTGTIVGIED ADPKKWQDSK WRCLKVRWDE TSTIPRPERV SPWKIEPALA 420 PPALNPLPMP RPKRARSNAV PSSPDSSVLT REGSSKAIVD PSPATGFSRV LQGQEFSTLR 480 GNFAESHESD TAEKSVIWRP TVDDEKIDVV HTSRRFGSEN WMSSGRHEPA AYTDLLSGFR 540 SNADSSLGYC PPMVDQTSLA SNPKRRQLLD QEGKLGSWSL MSSGLSLKLV DSNAKPSVQG 600 SEVPYQARGN GRFSGFGEYP VLQGHRIEHP HGNWLMPPPT SSNYENPIQS RDLMPKASLG 660 QDHENGKSRE GSCKLFGIPL ISNSVASEPT VSPINATNKA ASHVEAAPNQ ARTFTFDQKS 720 EQPKFSRLAE NLSIFNEQEK SFQLGQPHTR EVQSKSPSAS TRSCTKVLMQ GSALGRSVDL 780 TKFNNYDELI AELDQLFEFG GELMAPKKNW LVVYTDDEGD MMLVGDDPWQ EFCSMVRKIG 840 IYTREEVQKI KPGSLNSKGE DNPVSVEGPD AKDVKCTPAS STENC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-178 | 80 | 417 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-178 | 80 | 417 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-178 | 80 | 417 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-178 | 80 | 417 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-178 | 80 | 417 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the sepals and carpels of young flower buds. At stage 10 of flower development, expression in the carpels becomes restricted to the style. Also expressed in anthers and filaments. At stage 13, expressed in the region at the top of the pedicel, including the abscission zone. Expressed in developing siliques. {ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:15960614}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017605621.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A0B0MIX7 | 0.0 | A0A0B0MIX7_GOSAR; Auxin response factor | ||||
STRING | Gorai.001G054600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |