PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A07G0377

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 195aa MW: 22101.8 Da PI: 6.2529

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A07G0377	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.5	2.9e-17	70	120	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg++++ +Aaka++ a+ k++g Gh_A07G0377 70 HYRGVRRRP-WGKFAAEIRDP---NrKGIRVWLGTYDSDVGAAKAYDCAAFKMRG 120 7******.******9...6566******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.2E-30	69	129	IPR001471	AP2/ERF domain
CDD	cd00018	6.79E-26	70	128	No hit	No description
Pfam	PF00847	1.7E-12	70	120	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.86E-21	70	130	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.749	70	128	IPR001471	AP2/ERF domain
SMART	SM00380	1.4E-34	70	134	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-13	71	82	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.5E-13	110	130	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MAATFEESTT LEFFRQHLLG DVATPDAFIN TLDFDLSHLQ PQSHQLPEIF THGVEPGPIT 60 KGPLCEEKRH YRGVRRRPWG KFAAEIRDPN RKGIRVWLGT YDSDVGAAKA YDCAAFKMRG 120 QKAILNFPLE AGEGSQPPAV TTGRKRRREK RVWLPESDVT SPGSSEMAWE VKEEEGELDD 180 DDRNGLSLLT RIHLW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-26	69	134	4	69	ATERF1
3gcc_A	6e-26	69	134	4	69	ATERF1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	147	RKRRR
2	143	149	RKRRREK
3	143	150	RKRRREKR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.16341	0.0	boll

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37730468	0.0

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY181251	0.0	AY181251.1 Gossypium hirsutum ethylene-responsive element binding factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016697182.1	1e-144	PREDICTED: ethylene-responsive transcription factor ERF107-like
Swissprot	Q9LY05	3e-41	EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBL	A0A1U8K3Y6	1e-143	A0A1U8K3Y6_GOSHI; Ethylene-responsive element binding factor 1-7A
STRING	Gorai.001G051100.1	1e-120	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3229	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07580.1	2e-42	ERF family protein

Publications ? help Back to Top
Kim H,Go YS,Suh MC DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves. Plant Cell Physiol., 2018. 59(5): p. 966-977 [PMID:29425344]