PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0253 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 275aa MW: 29914.2 Da PI: 9.1505 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Gh_A07G0253 82 FSCNYCQRKFYSSQALGGHQNAH 104 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.33E-6 | 79 | 109 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MESVKKEPSP SESTSCVISA PDAPSISDEQ LKEPKPRLQL DLKLSTSDSD VPAFNFNQEL 60 NLIGSLNTPE TPQPADSEQR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRAQRIGVH 120 AAFGGHPYFH HNHYSSLASF PLQGPHNRSL GIEVHSSMIH EPSRTISSSV GFGNVYGHPS 180 WSRLPVNQQP AIAKLSTENS HAISRPGSTS RASLGRFDNV MRSRMMGLSS SADDDQLIGN 240 SWWSNGGGGG GGGGSSLNRK TELKEVHKVD LSLKL |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the chalaze of seeds, hypocotyls, cotyledons, roots, emerging lateral roots, leaves, sepals and stamens. These data suggest that ZFP3 is expressed in most organs, showing high expression in vascular tissues. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. Involved in the regulation of vegetative development and fertility. Modulates red light signaling in seedling photomorphogenesis. {ECO:0000269|PubMed:24808098}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by abscisic acid (ABA). {ECO:0000269|PubMed:24808098}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX614801 | 1e-100 | JX614801.1 Gossypium hirsutum clone NBRI_GE58454 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017632614.1 | 0.0 | PREDICTED: zinc finger protein 3 | ||||
Swissprot | Q39262 | 3e-39 | ZFP3_ARATH; Zinc finger protein 3 | ||||
TrEMBL | A0A1U8P358 | 1e-176 | A0A1U8P358_GOSHI; zinc finger protein 3 isoform X1 | ||||
STRING | Gorai.001G036700.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1893 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 1e-49 | C2H2 family protein |
Publications ? help Back to Top | |||
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