PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 434aa MW: 47996.2 Da PI: 6.3093 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.4 | 1e-07 | 383 | 416 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Gh_A07G0245 383 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 416 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.8e-10 | 337 | 358 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Gh_A07G0245 337 ELKHELKQGYKEKIVDIREEIL 358 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.6E-20 | 168 | 212 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.0E-17 | 170 | 211 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.7E-29 | 224 | 279 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.3E-21 | 228 | 278 | IPR005541 | KNOX2 |
Pfam | PF03789 | 1.0E-6 | 337 | 358 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 337 | 357 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 337 | 358 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 357 | 420 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 359 | 424 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-16 | 359 | 423 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.43E-11 | 360 | 421 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-25 | 364 | 421 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.2E-17 | 377 | 416 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence Send to blast |
MAFHHSSTHL SQDLPLHHFT DQQQQQQQPN QTQQGDQLQE TAAPNWLNSA LLRPQQPHPP 60 QPHPHFSDPN FLNLHTTTTA SDSTAASQAP NPMFSRSSSS LLHRNHGNVI DDAAAAAAAA 120 VGGGVMAVES GDLKNSISET MNNNKSEGVV VESGGGGGGD GIVNFQNARY KAEILAHPFY 180 EQLLSAHVAC LRIATPVDQL PRIDAQLAQS QHVVAKYSAL GGGSQGLVSD DKELDQFMTH 240 YVLLLCSFKE QLQQHVRVHA MEAVMACWEI EQSLQSLTGV SPGEGTGATM SDDDDDDQVD 300 SDANLFDTSL DGTDSMGFGP LIPTESERSL MERVRHELKH ELKQGYKEKI VDIREEILRK 360 RRAGKLPGDT TSVLKAWWQS HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHS 420 NPSTSTVSKT KRKR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 413 | 433 | RKRNWHSNPSTSTVSKTKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.10135 | 0.0 | boll| leaf| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016744645.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1U8P0J6 | 0.0 | A0A1U8P0J6_GOSHI; homeobox protein knotted-1-like 3 isoform X2 | ||||
STRING | Gorai.001G035700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-175 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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