PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0221
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 190aa    MW: 21105.7 Da    PI: 6.7724
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0221genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18555155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                 ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Gh_A07G0221  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                 59*****999.**********8.....334**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-22564No hitNo description
PROSITE profilePS5103222.036663IPR001471AP2/ERF domain
PfamPF008472.1E-11655IPR001471AP2/ERF domain
SMARTSM003804.2E-39669IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-20664IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32663IPR001471AP2/ERF domain
PRINTSPR003672.9E-10718IPR001471AP2/ERF domain
PRINTSPR003672.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MVQTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT  60
NFPVPNSGSD DNGSSPLPAE TLSEFLGAKL RKCCKDQSPS LTCLRLDTDN AHIGVWQKRA  120
GSRSSSNWVM RVELGNKKTT MEDGAASSSS ELSHMVEETE AVEEEDRVAM QMIEELLNWN  180
CPMNSTSAGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-17268169ATERF1
3gcc_A9e-17268169ATERF1
5wx9_A2e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269|PubMed:15319479}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5948324e-47JX594832.1 Gossypium hirsutum clone NBRI_GE30916 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016704038.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_017645113.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9585e-83SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A1U8KSR61e-139A0A1U8KSR6_GOSHI; ethylene-responsive transcription factor SHINE 2-like
STRINGGorai.001G033200.11e-126(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.25e-72ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]