PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0163 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 842aa MW: 92792.3 Da PI: 6.3683 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.1 | 6.3e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L ++ +++ +q+kvWFqNrR +ek+ Gh_A07G0163 20 KYVRYTPEQVEALERLYYECPKPSSMRRQQLIREYpilsNIEPKQIKVWFQNRRCREKQ 78 5679*****************************************************97 PP | |||||||
2 | START | 186.4 | 1.5e-58 | 166 | 374 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 +a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++++v+s+g g+++l +++ Gh_A07G0163 166 IADETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRDCRAVDVINVLSTGngGTIELLYMQ 262 68899*****************************************************.8888888888***************************** PP XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS START 98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191 l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s++ Gh_A07G0163 263 LYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPNmppAANFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTLL 360 *****************************************9999***************************************************** PP HHHHHHHHTXXXXX CS START 192 gaktwvatlqrqce 205 ++kt++a+l+++++ Gh_A07G0163 361 AQKTTMAALRHLRQ 374 *********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.839 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.6E-14 | 17 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.41E-15 | 20 | 80 | No hit | No description |
SuperFamily | SSF46689 | 8.13E-16 | 20 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.6E-15 | 21 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-17 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.15E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26.637 | 156 | 384 | IPR002913 | START domain |
CDD | cd08875 | 1.75E-83 | 160 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.9E-24 | 164 | 371 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 9.48E-39 | 165 | 377 | No hit | No description |
SMART | SM00234 | 1.6E-44 | 165 | 375 | IPR002913 | START domain |
Pfam | PF01852 | 4.7E-56 | 166 | 374 | IPR002913 | START domain |
Pfam | PF08670 | 7.3E-49 | 700 | 841 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 842 aa Download sequence Send to blast |
MMAVTSSCKE GNKIAMDNGK YVRYTPEQVE ALERLYYECP KPSSMRRQQL IREYPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQAVNR KLTAMNKLLM EENDRLQKQV SQLVYEKSYF 120 RQQSQQQAGL ATTDTSCDSV VTSGHQHHLT PQHPPRDASP AGLLSIADET LTEFLSKATG 180 TAVEWVQMPG MKPGPDSIGI VAISHGCTGV AARACGLVGL DPTRVAEILK DRPSWFRDCR 240 AVDVINVLST GNGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ 300 NGPNMPPAAN FVRAEMLPSG YLIRPCEGGG SIIHIVDHMD LEPWSVPEVL RPLYESSTLL 360 AQKTTMAALR HLRQISQEIS QPNVTGWGRR PAALRALSQK LSKGFNEAVN GFTDEGWSML 420 ESDGADDITL LVNSSPGKMM GINLSYTNGF PSVGTAVLCA KASMLLQNVP PAILLRFLRE 480 HRSEWADSGI DAYSAAAIKA GPCSLPMSRG GSFGGQVILP LAHTIEHEEF MEVIKLENMG 540 HYRDDMIMPG DIFLLQLCSG VDENAVGSCA ELIFAPIDAS FSDDALIIPS GFRIIPLDSG 600 TDASSPSRTL DLASTLEVGT AGNRTTGDRS GRCGNSKSVM TIAFQFVCEI HLQENIAAMA 660 RQYVRSIIAS VQRVALALSP SNFGSHAGFQ SPPGSPEAQT LARWICQSYR CFLRMELLKQ 720 EGNESILKSL WHHTDAILCC SMKALPIFMF GNQAGLDMLE TTLVALQDIS LEKIFDENGR 780 KALFAEFPQV MQQQGFMCLQ GGICLSSMGR AVSYERAVAW KVVNDEENAH CICFMFINWS 840 FV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22231 | 0.0 | boll| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016681632.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like isoform X1 | ||||
Refseq | XP_016681633.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-8-like isoform X2 | ||||
Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
TrEMBL | A0A1U8IU42 | 0.0 | A0A1U8IU42_GOSHI; homeobox-leucine zipper protein ATHB-8-like isoform X1 | ||||
STRING | Gorai.001G026800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2022 | 26 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32880.1 | 0.0 | homeobox gene 8 |