PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0148
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 487aa    MW: 52047.2 Da    PI: 4.619
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0148genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-11253298555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR++i +++ +L+el+P++      K +Ka++L   +eY++ Lq
  Gh_A07G0148 253 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDAIIEYVRFLQ 298
                  99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.12E-12246302No hitNo description
SuperFamilySSF474591.96E-16246308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.723248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16250307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-13254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDDYLDQYFA SSSWPDVNFK ERSPWVLSEP DQPNALLPSS PISMIGMNHG MECLATQSTP  60
LGVGPQTNGE SLGLQFNAGV HSSGSLKGLQ VVGDMTTLSQ SFNEGGDVIC NGGESSEFQR  120
SLTGLETLCS IPQFWQPQPY DGLISSLPMG QTQMQSSSLQ GDNGNVDDGN INRFVEIDKF  180
LQLENLSAPI NAKEKQDMQN SSYLSFPADR PMTDTMIDLP SLLQSSSPAP NKGCNGTGKP  240
QVRARRGQAT DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDAI IEYVRFLQLQ  300
VKVLSMSRLG AAGAVVPLIT DGQAEGSNGL TLTPLAMGSD GVDCSPSPEQ VVFEQEVVKL  360
MESNVTIAMQ YLQSKGLCLM PIALAAAISN GKASSSSSSG PVSEERKKFG FTNSIISNDD  420
RVHNTTTCSS SSDGGVRNSN SSNSSGTGNL SGVGIHQSTS DGNFMIEKIT GCNGTFKQEV  480
NTLCTAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016716906.10.0PREDICTED: uncharacterized protein LOC107929883
TrEMBLA0A1U8LQP00.0A0A1U8LQP0_GOSHI; uncharacterized protein LOC107929883
STRINGGorai.001G017900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-59LJRHL1-like 3