PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A07G0118 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 266aa MW: 29371.4 Da PI: 9.7743 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41 | 4.5e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE+e l +v+++G+g+Wk+I r R+ ++k++w+++ Gh_A07G0118 5 KQKWTAEEEEALRAGVAKYGKGNWKLIQRDPElspflFARSNIDLKDKWRNL 56 79****************************99999*977**********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.901 | 1 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.33E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.1E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.67E-20 | 6 | 56 | No hit | No description |
PROSITE profile | PS51504 | 21.981 | 105 | 173 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 7.07E-15 | 105 | 181 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00526 | 5.8E-15 | 105 | 168 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 6.1E-11 | 108 | 167 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene3D | G3DSA:1.10.10.10 | 4.9E-15 | 108 | 175 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGNPKQKWTA EEEEALRAGV AKYGKGNWKL IQRDPELSPF LFARSNIDLK DKWRNLSGGP 60 GGHGSREKSR ASKPKPSSDG SQGAVVVKQT ALPKPLVDDS SKSFAPNRYN EMIIEAISAL 120 KEPNGSDNRA IVGYIEQRQE VPQSFKKQLC SRLKRLVAIE KLEKVQNRYK IRKDETFGMK 180 TTSPKQKGTK LKQSQNAGHT TCDAVEEASM TAAYLIAEAE NKSFVAAEAV KEAERVSKMA 240 EDADSLLQLA KEIFETCSQG EIVLVA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.2762 | 0.0 | boll| ovule |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017617121.1 | 0.0 | PREDICTED: telomere repeat-binding factor 4-like | ||||
TrEMBL | A0A2P5WGA6 | 0.0 | A0A2P5WGA6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G013000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2321 | 28 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 3e-66 | MYB_related family protein |