PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A07G0064
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 349aa    MW: 41082.8 Da    PI: 4.2499
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A07G0064genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix39.81.2e-1299183286
     trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  Wt+qe+ +L+e+  ++  +l+r++l++ +W ++++k+  + +  ++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  Gh_A07G0064  99 WTQQEIYVLLEVWGNRFLQLGRRSLRGEDWVDIAEKVsDALKSVKNEAQCRRMIDGLKRKFKKEKSKAERM-GLNSSKWVFFRKME 183
                  *************************************6667778899*******************99986.89999********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-1598184No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDGIEPYSFN RHPQYPRSTR TRHVYSYGPD EELDDEEEME LDNEDVDDDN DDDPDVYYHR  60
VKESERFERY PKRQKVRTSV PSFQYAPDHR DSLKNAYDWT QQEIYVLLEV WGNRFLQLGR  120
RSLRGEDWVD IAEKVSDALK SVKNEAQCRR MIDGLKRKFK KEKSKAERMG LNSSKWVFFR  180
KMEMLMGLGS SSFRQQESWL ACGVDSGEFV FMNPQVYLDR SNGFDEMRDS PAESEIDDDD  240
DGEEADGGSM KVDVNDEHSL RMLAESVQRF SKIYEKIESS KREHMKELEK MRMDFQKELE  300
VQKKQILEKA QAEIAKMKEE DDDDDDDDDE TDDDDDGDDN GDSTENISE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.153760.0boll
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1098586360.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9645521e-95JX964552.1 Gossypium hirsutum clone NBRI_TRANS-821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016718080.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X1
RefseqXP_017606774.10.0PREDICTED: trihelix transcription factor ASIL1 isoform X1
TrEMBLA0A1U8LU280.0A0A1U8LU28_GOSHI; trihelix transcription factor ASIL1-like isoform X1
STRINGGorai.001G004200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97792733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.13e-82Trihelix family protein