PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G2114

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 403aa MW: 45813.2 Da PI: 6.8001

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G2114	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.1	1.8e-49	37	162	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + ++++ Gh_A06G2114 37 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRGENSRS 133 79*************************.89***********888889***************************************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkktLvfy+g+apkg +++W+m+eyrl Gh_A06G2114 134 IGLKKTLVFYSGKAPKGIRSSWIMNEYRL 162 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.63E-56	36	182	IPR003441	NAC domain
PROSITE profile	PS51005	55.408	36	183	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	38	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAIASMSNDN TSNVDLDFNN SNSSSSSKDD HEQDMVMPGF RFHPTEEELV EFYLRRKVEG 60 KRFNVELITF LDLYRYDPWE LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT 120 GADRMIRGEN SRSIGLKKTL VFYSGKAPKG IRSSWIMNEY RLPHHETERY QKAEISLCRV 180 YKRAGVEDHP SLPRCLPTRA LTSSRGLQSE KKYSQAQDAA QQAMERFQGF GGGESQPQLE 240 IEKISETDGS SSSTSDVTTA LALSKQNVYR PTALIRTTLG LPSGIMEEEG LFLNQSKQGC 300 TSLLPNSTTL FQLGSSSVSS NVVDDLHRLV SYQQATMNPL QFYNTYQQQQ QQPEFSTLPP 360 QSQAQQLSLN VLPSSLPLTT FSDRLWEWSP IPEPSREFTN PFK

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAIASMSNDN TSNVDLDFNN SNSSSSSKDD HEQDMVMPGF RFHPTEEELV EFYLRRKVEG  60
KRFNVELITF LDLYRYDPWE LPAMAAIGEK EWFFYVPRDR KYRNGDRPNR VTTSGYWKAT  120
GADRMIRGEN SRSIGLKKTL VFYSGKAPKG IRSSWIMNEY RLPHHETERY QKAEISLCRV  180
YKRAGVEDHP SLPRCLPTRA LTSSRGLQSE KKYSQAQDAA QQAMERFQGF GGGESQPQLE  240
IEKISETDGS SSSTSDVTTA LALSKQNVYR PTALIRTTLG LPSGIMEEEG LFLNQSKQGC  300
TSLLPNSTTL FQLGSSSVSS NVVDDLHRLV SYQQATMNPL QFYNTYQQQQ QQPEFSTLPP  360
QSQAQQLSLN VLPSSLPLTT FSDRLWEWSP IPEPSREFTN PFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-54	38	183	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-54	38	183	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-54	38	183	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-54	38	183	19	165	NO APICAL MERISTEM PROTEIN
4dul_A	4e-54	38	183	19	165	NAC domain-containing protein 19
4dul_B	4e-54	38	183	19	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269\|PubMed:17653269}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847243	0.0	KC847243.1 Gossypium hirsutum NAC domain protein NAC66 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016725779.1	0.0	PREDICTED: protein ATAF2-like
Swissprot	Q9ZVP8	1e-120	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A1U8MJN5	0.0	A0A1U8MJN5_GOSHI; protein ATAF2-like
STRING	Gorai.010G142400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-114	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]