PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G2044

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 211aa MW: 23143 Da PI: 8.3379

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G2044	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.9	2.5e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g Gh_A06G2044 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	8.55E-22	5	63	No hit	No description
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.05E-19	6	63	IPR016177	DNA-binding domain
SMART	SM00380	2.1E-37	6	69	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.8E-32	6	64	IPR001471	AP2/ERF domain
Pfam	PF00847	2.5E-11	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MVQSKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPKAAHPGE QNARGGGGGG DDDDDDDRSP LPPKALAELL NAKLRKCCKD QSPSLTCLRL 120 DTDNSHIGVW QKRAGNRSSS NWVMRVELGN KKVDTPASGD RRTLSPGSST TADEIEAGNL 180 MGEEDRIALQ MIEELLNWNC PVTSSTSLIG V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	1e-16	2	70	1	70	ATERF1
3gcc_A	1e-16	2	70	1	70	ATERF1
5wx9_A	6e-16	6	63	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Found in all organs, mostly in veins, epidermis and trichome bases. Specific expression in lateral root tips. {ECO:0000269\|PubMed:15319479}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ393476	1e-135	GQ393476.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0441 SSR marker CGR5436 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016754933.1	1e-155	PREDICTED: ethylene-responsive transcription factor SHINE 2-like
Refseq	XP_017644749.1	1e-155	PREDICTED: ethylene-responsive transcription factor SHINE 2-like
Swissprot	Q3E958	3e-79	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	A0A0B0NPU2	1e-154	A0A0B0NPU2_GOSAR; Ethylene-responsive transcription factor SHINE 3-like protein
TrEMBL	A0A1U8PX45	1e-154	A0A1U8PX45_GOSHI; ethylene-responsive transcription factor SHINE 2-like
TrEMBL	A0A2P5YCB0	1e-154	A0A2P5YCB0_GOSBA; Uncharacterized protein
STRING	Gorai.010G114800.1	1e-131	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM834	28	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25390.2	1e-71	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]