PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A06G2028 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 34340.5 Da PI: 9.039 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.2 | 4e-33 | 57 | 198 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......sgyW 83 lp+G++F+Ptd+e++ e+L++kv +k ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W Gh_A06G2028 57 LPAGVKFDPTDQEIL-EHLEAKVILDKynlhplIDEFIPtLEGEnGICYTHPERLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtghedgsETRW 152 799***********9.999999888885665442222222333336**********.555666777******************8553344444667* PP NAM 84 katgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++tgk+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l Gh_A06G2028 153 HKTGKTRPVLV-GGTVKGYKKILVLYtnYGRQKKPEKTNWVMHQYHL 198 ***********.99************6658***************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.75E-39 | 51 | 217 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.054 | 57 | 217 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-15 | 58 | 198 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 306 aa Download sequence Send to blast |
MTWCNNTVDD RALHIATKEP IVSVATSAAA ASTISCPSCG HNIPYQDQAG IHDLPGLPAG 60 VKFDPTDQEI LEHLEAKVIL DKYNLHPLID EFIPTLEGEN GICYTHPERL PGVSKDGQIR 120 HFFHRPSKAY TTGTRKRRKV HTGHEDGSET RWHKTGKTRP VLVGGTVKGY KKILVLYTNY 180 GRQKKPEKTN WVMHQYHLGN NEDEKDGELV VSKVFYQAQP RQCGTSSSIK EPLNRKSKNI 240 IQTPNSSSRG VVEYYNQPFI SFDHGHGSHH YRENPPQIIP NFGVQGDESS FYRLASDTSK 300 GKGRSL |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847233 | 0.0 | KC847233.1 Gossypium hirsutum NAC domain protein NAC56 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016754106.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-120 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A1U8PSJ4 | 0.0 | A0A1U8PSJ4_GOSHI; NAC domain-containing protein 73-like | ||||
STRING | Gorai.010G157600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-115 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|