PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1947

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 309aa MW: 36251.6 Da PI: 6.7942

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1947	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	160	9.1e-50	22	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 l pGfrFhPtdeelv +yLk+kve+k +++ + ik+vdiyk++PwdLp+ + + +ekewyfF+kr +ky+++ r+nr+t sg+Wkatg dk++ Gh_A06G1947 22 LLPGFRFHPTDEELVGFYLKRKVEKKLFTI-DLIKHVDIYKFDPWDLPRvskvS--StvGEKEWYFFCKRGRKYKNSIRPNRVTVSGFWKATGIDKPI 116 579**********************999.99**********9545443..244889********************************** PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ +glkk+Lv+ykg+a kg+ktdW+mhe+rl Gh_A06G1947 117 YGVgeyhNNSIIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 156 9877777778**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.97E-54	21	181	IPR003441	NAC domain
PROSITE profile	PS51005	54.003	22	181	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	24	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEDVEMEKIV SCNTEEEEED ILLPGFRFHP TDEELVGFYL KRKVEKKLFT IDLIKHVDIY 60 KFDPWDLPRV SKVSSTVGEK EWYFFCKRGR KYKNSIRPNR VTVSGFWKAT GIDKPIYGVG 120 EYHNNSIIGL KKSLVYYKGS AGKGTKTDWM MHEFRLPLDQ NHAKDNFEEA EVWTVCRIFK 180 RDVTCRKHAL DWQNKKKNNN NKKNDNNINI NWNVQNISAI NSRTCSTEES ENSLEFLGEK 240 EIENFPGKLN QFSFTSDHHH HHHQGTSQVL SFSNPNNGDG LFFGQQQWND EFKPVVDYNF 300 GDSLLYSDW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-47	22	187	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-47	22	187	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-47	22	187	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-47	22	187	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-47	22	187	20	174	NAC domain-containing protein 19
3swm_B	2e-47	22	187	20	174	NAC domain-containing protein 19
3swm_C	2e-47	22	187	20	174	NAC domain-containing protein 19
3swm_D	2e-47	22	187	20	174	NAC domain-containing protein 19
3swp_A	2e-47	22	187	20	174	NAC domain-containing protein 19
3swp_B	2e-47	22	187	20	174	NAC domain-containing protein 19
3swp_C	2e-47	22	187	20	174	NAC domain-containing protein 19
3swp_D	2e-47	22	187	20	174	NAC domain-containing protein 19
4dul_A	1e-47	22	187	17	171	NAC domain-containing protein 19
4dul_B	1e-47	22	187	17	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017614396.1	0.0	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	4e-81	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A0D2RCM9	0.0	A0A0D2RCM9_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8PPC0	0.0	A0A1U8PPC0_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRING	Gorai.010G236700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	6e-81	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]