PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1891
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 406aa    MW: 44599.1 Da    PI: 4.6341
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1891genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.0001354394954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r R ++i +  + Lr+l+P+      +K + +++L +A++Y+ksL
  Gh_A06G1891 354 KRLRIEKIHETVSVLRSLIPSG----EGK-DAIMVLDEAIDYLKSL 394
                  6899*****************6....244.569***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.058345394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-6349400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-5355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.73E-4355395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MVCQAASQTR FRALKYENGI AGSATIVVRV IACFQPLQDC QVCFFLCTKQ SLYERIRYPF  60
LLSMGEGCGF SFPQQRFDWL SHDLSYLAAP HPLVQQNTNP QLVNSGIDMV SVPRTLPDYA  120
NPGIIPQLQV GQVNEPCGWF YCSPHYWQGL LPASTNPYEY YNEKIVSKAG LGCAQKRFLV  180
FDQSGDQTTM IFSSSLGTPI KCATWGPKSP AACNFNGEDP ITKVNPDLHS GLISSNVYDE  240
NGTNTQSEMH EDTEELNALL YSDDDSYYTD DEVTSAVHSP CTMTAHPEQL EGGGTESVAS  300
SIGPTKKRKL LDDGNDYLPL LTDAASSVNP SRCSEYVDDA DSSCANMESS SSNKRLRIEK  360
IHETVSVLRS LIPSGEGKDA IMVLDEAIDY LKSLKLKAKT LGLNAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.32241e-162boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754518e-32HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755248e-32HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645828.10.0PREDICTED: transcription factor bHLH145
TrEMBLA0A2P5YCU50.0A0A2P5YCU5_GOSBA; Uncharacterized protein
STRINGGorai.010G035900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1053059
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.17e-08LJRHL1-like 2