PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1845

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 526aa MW: 59383.5 Da PI: 6.8835

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1845	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.5	1.2e-09	301	338	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LAk++gLt +qV +WF N R + Gh_A06G1845 301 FEHflHPYPKDSEKIMLAKQTGLTRNQVANWFINARVR 338 664459******************************88 PP
2	BELL	126.4	1.1e-40	164	235	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk++Lls+l+eVd+rY+qy++q+++++ssF+ +ag+g+akpYtslAl++iSrhFrcL+dai++qi Gh_A06G1845 164 ERQELQNKKTRLLSMLDEVDRRYRQYYHQMKILVSSFDSAAGCGAAKPYTSLALQTISRHFRCLRDAISNQI 235 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.3E-57	103	233	IPR006563	POX domain
Pfam	PF07526	1.7E-47	109	232	IPR006563	POX domain
PROSITE profile	PS50071	12.406	279	342	IPR001356	Homeobox domain
CDD	cd00086	3.44E-12	282	343	No hit	No description
SMART	SM00389	6.7E-10	282	346	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.84E-17	283	349	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	285	348	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-17	299	338	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MATYYPSFTN RRDDLSIEDE KPVPYRASSM GEFTEILSGT SLIPPCSDSL QTVNGRLNIT 60 TSVVNCQSQG LSLSLGSEIP PDVSLPSLPC QYQAYSDIYQ FQPGFTSTIS NSKYLKVVQE 120 LLNEVINVQQ ALRQPDFDKN MSSQLKSSES NESINNLSKI SPTERQELQN KKTRLLSMLD 180 EVDRRYRQYY HQMKILVSSF DSAAGCGAAK PYTSLALQTI SRHFRCLRDA ISNQIQLTQR 240 SLGEHDNSLN NQGSVIPRLR YVDHQLRQQR ALQQFGVMRN AWRPQRGLPE SSVSVLRAWL 300 FEHFLHPYPK DSEKIMLAKQ TGLTRNQVAN WFINARVRLW KPMIEEMYKE EFGEMDSNFK 360 SSLENAAKAT GENSSASKDR GEELHENITS KVACADNIQP GQVQYPKPDH IPDVEPNRPT 420 ARSMYQNIAN PYPNTVIPSN QHGHGTLMTG DTMYDLTELN GFAVGNQVSL ALGLRNHENK 480 VFTMSGSTNH KVDSSVGSET VDFRFVEPGN QQDRFGNSHI LHDFVV

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MATYYPSFTN RRDDLSIEDE KPVPYRASSM GEFTEILSGT SLIPPCSDSL QTVNGRLNIT  60
TSVVNCQSQG LSLSLGSEIP PDVSLPSLPC QYQAYSDIYQ FQPGFTSTIS NSKYLKVVQE  120
LLNEVINVQQ ALRQPDFDKN MSSQLKSSES NESINNLSKI SPTERQELQN KKTRLLSMLD  180
EVDRRYRQYY HQMKILVSSF DSAAGCGAAK PYTSLALQTI SRHFRCLRDA ISNQIQLTQR  240
SLGEHDNSLN NQGSVIPRLR YVDHQLRQQR ALQQFGVMRN AWRPQRGLPE SSVSVLRAWL  300
FEHFLHPYPK DSEKIMLAKQ TGLTRNQVAN WFINARVRLW KPMIEEMYKE EFGEMDSNFK  360
SSLENAAKAT GENSSASKDR GEELHENITS KVACADNIQP GQVQYPKPDH IPDVEPNRPT  420
ARSMYQNIAN PYPNTVIPSN QHGHGTLMTG DTMYDLTELN GFAVGNQVSL ALGLRNHENK  480
VFTMSGSTNH KVDSSVGSET VDFRFVEPGN QQDRFGNSHI LHDFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	6e-16	288	346	5	63	Homeobox protein Meis2
3k2a_B	6e-16	288	346	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.24761	0.0	stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016748732.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-120	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	A0A1U8PC10	0.0	A0A1U8PC10_GOSHI; BEL1-like homeodomain protein 7
STRING	Gorai.010G007800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-119	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]