PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1844 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 325aa MW: 37478.6 Da PI: 8.3522 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 31 | 4.4e-10 | 258 | 296 | 18 | 54 |
HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 lF+ ++yp+ +e+ L++++gLt++qV++WF N R + Gh_A06G1844 258 LFQHflHPYPTDSEKLTLSSQTGLTKNQVSNWFINARVR 296 5775569******************************88 PP | |||||||
2 | BELL | 82.2 | 6.7e-27 | 129 | 199 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++el++ +kL+ lleeV+ +Y++y++q+++v+s Fe ++g+g+a+ Yt+l l+a+ rhF L+d i +i Gh_A06G1844 129 EHELHITLTKLIGLLEEVETQYEKYNNQMEQVVSLFESIVGVGAARCYTALTLQAMCRHFGKLRDTILTRI 199 6899***************************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.4E-18 | 78 | 197 | IPR006563 | POX domain |
Pfam | PF07526 | 2.5E-28 | 83 | 195 | IPR006563 | POX domain |
CDD | cd00086 | 6.13E-12 | 240 | 301 | No hit | No description |
SMART | SM00389 | 9.3E-10 | 240 | 304 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-27 | 245 | 305 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-17 | 246 | 307 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-17 | 257 | 296 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 11.774 | 259 | 300 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MVSRDSTPNR TSRMLHHFDA YNTEISHTRH LMDLLGAPND SYRHHRTQTL TLSLGFCMLG 60 SSFHGAEDTS DDYPFIGHPT TYVIGNSRYL IPAQSLLNEL VNVGFKNIDE TPKLSSEFFR 120 SKIVPSPDEH ELHITLTKLI GLLEEVETQY EKYNNQMEQV VSLFESIVGV GAARCYTALT 180 LQAMCRHFGK LRDTILTRIN RTRTNVRHDL SRINRGLSRM SLFDRGFRHS NTLCVQRQVW 240 RPVRGLPQTS VAILRSWLFQ HFLHPYPTDS EKLTLSSQTG LTKNQVSNWF INARVRLWKP 300 MIEEIYEKEL ADSPQHVSHD ILIEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-16 | 246 | 304 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 2e-16 | 246 | 304 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016748731.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 11 | ||||
Swissprot | Q1PFD1 | 2e-78 | BLH11_ARATH; BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A1U8PC16 | 0.0 | A0A1U8PC16_GOSHI; BEL1-like homeodomain protein 11 | ||||
STRING | Gorai.010G007700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9736 | 27 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 1e-74 | BEL1-like homeodomain 11 |