PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1815

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1775aa MW: 200471 Da PI: 5.1231

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1815	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.2	3.3e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgLt+rq ++WF+ rR kekk Gh_A06G1815 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLTDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-19	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	25	85	IPR001356	Homeobox domain
SMART	SM00389	5.5E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	8.4E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	1.23E-14	30	84	No hit	No description
SMART	SM00571	7.5E-20	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.346	542	601	IPR018501	DDT domain
Pfam	PF02791	1.2E-15	543	598	IPR018501	DDT domain
Pfam	PF05066	1.6E-14	749	816	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	968	1012	IPR028942	WHIM1 domain
Pfam	PF15613	3.3E-12	1153	1225	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1775 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLTDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RPGHPYESKV YERNDGRSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVSQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRARVLP QQGIIPSSSH 300 VADDSLAERE SFTNGRNAPS ICHPVLGSED SYMLSAEQSL NNDADPRIDR KRKVSSLSDE 360 TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER 420 TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL 480 LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK GPFDIQPWID 540 SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA ILRSIIKDIE 600 DVARTPATGL GMNQYCSANP EGGHLQIVEG VSGVIGFSCC LFSLLLNHFA FGVCQAYSWG 660 FDIRNWQHHL NPLTWPEIFR QLAISAGFGP QLKKQNATWT YTGDNDEGKG CADVVSTLRN 720 GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL ELADKIQKSG 780 LRDLTTSKTP EASISVALTR DGKLFERIAP STYCVRPAYR KDPADAEAIL ATARRKIRQF 840 ENGFLGGEDA DEVERDEVER DDVERDEESE CDVDEDPEVD DIATPSNANK DADYPKNEVN 900 TCLGSKNFHA SADDELDVPA EFDKDFPPFP SNTVKVDNDP SNTGQYVASE ENGTGNPDQQ 960 NIEIDESESG ESWIQGLSEG EYSHLSVEER LNALVALIGI ANEGNSIRAV LEDRLEAANA 1020 LKKQMWAEAQ LDKSRLKEEC IIKMDFPPVM GIKTDAQLPN SAVEGSRSPF PVADNKNDEA 1080 SPSIPEDQKP LLCSQNVQND LNSYPAERAL VLQDASMGPE NFCAQQHGYA SKRSRSQLKS 1140 YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS GQIFVELHDR KWRLIDSEEA 1200 FDALLASLDA RGIRESHLRI MLRKIESSFK ENVRRNLHSA RAMGRSGNSS ENEASEIDSG 1260 PDFSGSFDSP RNGICGLNSD ASETLPCFKI QLGRNENERK SAMKRYQDFQ RWMWNECYNS 1320 STLCAMKYEK KRCTQLLAVC DTCLGSHMPE DVHCSYCHQT FRAFNNNFNF YDHEIRCKEN 1380 RKLDNKDKHT LDSSLPMGIN LLKSFCALVE VSIPPEALDS MWAEGQRKMW GRKLNASSSA 1440 DELLKLLTQL ESAIKRDYLS SNFETTKELL GSSLQSENDS STVSVLPWIP QTTPAVALRL 1500 LELDSSIMYV KPEKVEPPEN REARASYIKL PSRTSLFIKN KELGLKELDQ DEPMKENFTD 1560 LSNSKRSSYK RGRGAREQGS GRKWQRKGSG SKSDAGKQSV RENNNLSFQL KQQSQRTGQS 1620 SGHGRRTVRK RAESRAANST TMARMSDVVK PKADAISVRD LDEEWRAERF GMMATVNPPD 1680 SNSTEEESDD DGQGEGYGQG NWELDLNGAS NGWSREPMEA SYEEDDAYED DNGIEQVVEE 1740 ESDGDLEMSD ASDDVPNETR NDDVLDSADS EDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1775 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLTDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RPGHPYESKV YERNDGRSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVSQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRARVLP QQGIIPSSSH  300
VADDSLAERE SFTNGRNAPS ICHPVLGSED SYMLSAEQSL NNDADPRIDR KRKVSSLSDE  360
TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER  420
TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL  480
LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK GPFDIQPWID  540
SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA ILRSIIKDIE  600
DVARTPATGL GMNQYCSANP EGGHLQIVEG VSGVIGFSCC LFSLLLNHFA FGVCQAYSWG  660
FDIRNWQHHL NPLTWPEIFR QLAISAGFGP QLKKQNATWT YTGDNDEGKG CADVVSTLRN  720
GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL ELADKIQKSG  780
LRDLTTSKTP EASISVALTR DGKLFERIAP STYCVRPAYR KDPADAEAIL ATARRKIRQF  840
ENGFLGGEDA DEVERDEVER DDVERDEESE CDVDEDPEVD DIATPSNANK DADYPKNEVN  900
TCLGSKNFHA SADDELDVPA EFDKDFPPFP SNTVKVDNDP SNTGQYVASE ENGTGNPDQQ  960
NIEIDESESG ESWIQGLSEG EYSHLSVEER LNALVALIGI ANEGNSIRAV LEDRLEAANA  1020
LKKQMWAEAQ LDKSRLKEEC IIKMDFPPVM GIKTDAQLPN SAVEGSRSPF PVADNKNDEA  1080
SPSIPEDQKP LLCSQNVQND LNSYPAERAL VLQDASMGPE NFCAQQHGYA SKRSRSQLKS  1140
YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS GQIFVELHDR KWRLIDSEEA  1200
FDALLASLDA RGIRESHLRI MLRKIESSFK ENVRRNLHSA RAMGRSGNSS ENEASEIDSG  1260
PDFSGSFDSP RNGICGLNSD ASETLPCFKI QLGRNENERK SAMKRYQDFQ RWMWNECYNS  1320
STLCAMKYEK KRCTQLLAVC DTCLGSHMPE DVHCSYCHQT FRAFNNNFNF YDHEIRCKEN  1380
RKLDNKDKHT LDSSLPMGIN LLKSFCALVE VSIPPEALDS MWAEGQRKMW GRKLNASSSA  1440
DELLKLLTQL ESAIKRDYLS SNFETTKELL GSSLQSENDS STVSVLPWIP QTTPAVALRL  1500
LELDSSIMYV KPEKVEPPEN REARASYIKL PSRTSLFIKN KELGLKELDQ DEPMKENFTD  1560
LSNSKRSSYK RGRGAREQGS GRKWQRKGSG SKSDAGKQSV RENNNLSFQL KQQSQRTGQS  1620
SGHGRRTVRK RAESRAANST TMARMSDVVK PKADAISVRD LDEEWRAERF GMMATVNPPD  1680
SNSTEEESDD DGQGEGYGQG NWELDLNGAS NGWSREPMEA SYEEDDAYED DNGIEQVVEE  1740
ESDGDLEMSD ASDDVPNETR NDDVLDSADS EDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	383	404	KRRKSEERMRKEMERLERERRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20391	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-103	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641595.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0B0NWU2	0.0	A0A0B0NWU2_GOSAR; Homeobox aristaless
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1