PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1814

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1746aa MW: 198040 Da PI: 5.1453

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1814	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.2e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gh_A06G1814 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-19	13	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-17	17	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	25	85	IPR001356	Homeobox domain
SMART	SM00389	1.6E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.8E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	3.96E-14	30	84	No hit	No description
PROSITE profile	PS50827	16.504	538	597	IPR018501	DDT domain
SMART	SM00571	4.8E-21	538	597	IPR018501	DDT domain
Pfam	PF02791	9.8E-16	539	594	IPR018501	DDT domain
Pfam	PF05066	4.2E-15	720	787	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-8	939	983	IPR028942	WHIM1 domain
Pfam	PF15613	8.1E-13	1124	1196	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1746 aa Download sequence Send to blast
MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK QRKGAALPPE SPVDELRAMP GPDYGSGSGS 120 GSSPYMDTRK LGVSSSRGMM EDAPAVRRYY ESQQSILELR AIACVETQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV FERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVTQSH FHESPVSGSR GRATSFVHGD EPLSRIHGIQ GQGSRALVLP QQGIIPASSH 300 VADDSLAERE SFTNGRNAPT ICHPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA 360 REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE 420 QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE 480 QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN 540 VGNLFMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR 600 TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG 660 PQLKKQNATW TYTGDNEEGK GCTDVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG 720 TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA 780 PSTYCVRPAY RKDPADAEAI LATARKKIRQ FENGFLGVED ADEVERDEVE RDDVERDEDS 840 ECDVDEDPEV DDIATPSNAN KDADYRKDEV NTCLGSKKVL ASADDDLDVP AEFDKDFPSF 900 PSNTVKVDND PSNTGQYVAS EENGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE 960 RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV 1020 MGIKTEAQLP NSAVEGSRSP FPVADNKNDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA 1080 LVVQDASMGP ENFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF 1140 VASASKNDPC SGRIFVELHD GNWRLIDSEE AFDALLASLD VRGIRESHLR IMLQKIESSF 1200 KENVRRNLHS ARAMGRSGSS SENEVSEIDS SPDFTGSFDS PRSGICGLNS DALEALPAFK 1260 IQLGRNENER KSAMKRYQDF QRWMWNECYN SSTLCAMKYE KKRCTQLLAV CDTCLGSHMP 1320 EDVHCSYCHQ TFRAFNNNFN FYEHEIRCKE NRKLDNKDKH TLDSSLPMGI NLLKSFCAVV 1380 EVSIPPEALD SMWTEGQRKM WGRKLNASSS ANELLKLLTQ LESAIKRDYL SSNFETTRDL 1440 LGSSFQSEND SSTDSVLPWI PQITPAVALR LLELDSSIMY VKQEKVEPPE NREARASYIK 1500 LPSRTSLFIK NKELELKELD QDEPMKEENF ADLSNSKRSS YKRGRGAREQ GSGRKWQRKA 1560 SGSKSDIGKQ SARENNNLSF HLKQQSQRTG QSSGRGRRTV RKRAERRVAN STIVTQMGDM 1620 VKPKSNTVSL RDLDEEWRTE RFGMMETVNP PDSNSTEESD DNGQGEGYEQ GNWELDLNGA 1680 SNGWNREPIE ASYEDDDAYE DDNGFEQMLE EESEGDLEMS DASDDVPNET RNDDGSDSAD 1740 SEDYSD

Sequence ? help Back to Top

Protein Sequence Length: 1746 aa Download sequence Send to blast

MEAGSEGENN QISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK QRKGAALPPE SPVDELRAMP GPDYGSGSGS  120
GSSPYMDTRK LGVSSSRGMM EDAPAVRRYY ESQQSILELR AIACVETQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV FERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVTQSH FHESPVSGSR GRATSFVHGD EPLSRIHGIQ GQGSRALVLP QQGIIPASSH  300
VADDSLAERE SFTNGRNAPT ICHPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA  360
REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE  420
QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE  480
QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN  540
VGNLFMAWRF LITFADILRL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR  600
TPATGLGMNQ YCAANPEGGH LQIVEGAYSW GFDIRNWQHH LNPLTWPEIF RQLAISAGFG  660
PQLKKQNATW TYTGDNEEGK GCTDVVSTLR NGSAAENAFA LMREKGLLLP RRSRHRLTPG  720
TVKFAAFHVL SLEGSKGLTV LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA  780
PSTYCVRPAY RKDPADAEAI LATARKKIRQ FENGFLGVED ADEVERDEVE RDDVERDEDS  840
ECDVDEDPEV DDIATPSNAN KDADYRKDEV NTCLGSKKVL ASADDDLDVP AEFDKDFPSF  900
PSNTVKVDND PSNTGQYVAS EENGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE  960
RLNALVALIG IANEGNSIRA VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE CIIKMDFPPV  1020
MGIKTEAQLP NSAVEGSRSP FPVADNKNDE ASPSIPEDQK PLLCSQNVQN DLNSYPAERA  1080
LVVQDASMGP ENFSAQQHGY ASKRSRSQLK SYIAHRAEEM YVYRSLPLGQ DRRRNRYWQF  1140
VASASKNDPC SGRIFVELHD GNWRLIDSEE AFDALLASLD VRGIRESHLR IMLQKIESSF  1200
KENVRRNLHS ARAMGRSGSS SENEVSEIDS SPDFTGSFDS PRSGICGLNS DALEALPAFK  1260
IQLGRNENER KSAMKRYQDF QRWMWNECYN SSTLCAMKYE KKRCTQLLAV CDTCLGSHMP  1320
EDVHCSYCHQ TFRAFNNNFN FYEHEIRCKE NRKLDNKDKH TLDSSLPMGI NLLKSFCAVV  1380
EVSIPPEALD SMWTEGQRKM WGRKLNASSS ANELLKLLTQ LESAIKRDYL SSNFETTRDL  1440
LGSSFQSEND SSTDSVLPWI PQITPAVALR LLELDSSIMY VKQEKVEPPE NREARASYIK  1500
LPSRTSLFIK NKELELKELD QDEPMKEENF ADLSNSKRSS YKRGRGAREQ GSGRKWQRKA  1560
SGSKSDIGKQ SARENNNLSF HLKQQSQRTG QSSGRGRRTV RKRAERRVAN STIVTQMGDM  1620
VKPKSNTVSL RDLDEEWRTE RFGMMETVNP PDSNSTEESD DNGQGEGYEQ GNWELDLNGA  1680
SNGWNREPIE ASYEDDDAYE DDNGFEQMLE EESEGDLEMS DASDDVPNET RNDDGSDSAD  1740
SEDYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	379	400	KRRKSEERMRKEMERHERERRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4893	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-110	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641696.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1-like isoform X2
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2RDR8	0.0	A0A0D2RDR8_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1