PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1468 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 720aa MW: 81333.2 Da PI: 5.7237 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 394.3 | 1.3e-120 | 346 | 716 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+av+++d + a++lL+++++++sp gd mqRla+yf+ +L+arla+s+++ y+ + +++ts +++l+a++lf ++P+ k+s + Gh_A06G1468 346 LRTLLTLCAQAVATDDRRSANELLKQIRQHSSPMGDGMQRLAHYFVDGLEARLAGSGTQSYNPVFTRPTS---AANVLKAYHLFLAACPFRKLSDFFS 440 5789*********************************************************999998888...999********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N +I++ +e++ r+HiiDf+i +G+QWp+L++ L++Rp+gpp+l+iTg++ p++g +e++eetg+rLa++Ae+++vpfef++ +a++++++++e++ Gh_A06G1468 441 NTTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSTRPGGPPKLKITGIDLPQPGfrPAERVEETGRRLANYAETFKVPFEFHA-IAQKWDTIQIEDI 537 ******************************************************9*****************************.7************ PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++gE+l+Vn++++l +llde+v +es+r++vL+l+++l P+v+++ + ++++ F +rf eal +ys+lfd+le+++pre er+ +Ere++g+ Gh_A06G1468 538 KIESGEVLIVNCIYRLRNLLDETVVVESPRNKVLNLMRKLHPDVLILGIVNGAYSAPFFITRFREALFHYSTLFDMLETNVPREIPERMLIEREIFGW 635 ************************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 e++nv+acegaer+er et+++W+ r ++aGF+++pl+++++k+ak +++ + + + ++e++++l++gWk+r +++ S+W Gh_A06G1468 636 EAMNVIACEGAERIERPETYKQWQVRTTRAGFRQLPLDKEMMKTAKERVNTSYHKDFVIDEDNHWLLQGWKGRIVYAHSCW 716 *****************************************************888************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 69.282 | 320 | 697 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.6E-118 | 346 | 716 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MDPSLQGLYS SVDRFRVNDE TLLAISSPNF NNGFKNETFA GIPPLQPAMI PINLLPSASV 60 NEPEDYDFSD VVLKYISEML MEEDMEDKTC MFKESSAALQ AAEKSFYEVL GEQYPPSLEP 120 ELKYQNHESS NELRGQSCCS CSSGDGNLLN LPCNYDLGVQ MSLNYSSQAN SSHSSGNSAG 180 SLVDGFTDSP VSTPRLPEIF GDSESVIQFR KGFEEASRFL PNRGNLFVDV ESDGLFLKEV 240 KEEAKSVVEK VENELLQDRP RGKKKPYPED VNLYNGRSNK QSSVYTESTV SPEMFDTVLL 300 NCQSLADLQK VLQHETNKNV QQNGQSKGPT GGKARAKKGK WNVVDLRTLL TLCAQAVATD 360 DRRSANELLK QIRQHSSPMG DGMQRLAHYF VDGLEARLAG SGTQSYNPVF TRPTSAANVL 420 KAYHLFLAAC PFRKLSDFFS NTTIMNLAEN AARLHIIDFG ILYGFQWPCL IRRLSTRPGG 480 PPKLKITGID LPQPGFRPAE RVEETGRRLA NYAETFKVPF EFHAIAQKWD TIQIEDIKIE 540 SGEVLIVNCI YRLRNLLDET VVVESPRNKV LNLMRKLHPD VLILGIVNGA YSAPFFITRF 600 REALFHYSTL FDMLETNVPR EIPERMLIER EIFGWEAMNV IACEGAERIE RPETYKQWQV 660 RTTRAGFRQL PLDKEMMKTA KERVNTSYHK DFVIDEDNHW LLQGWKGRIV YAHSCWVPAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-50 | 353 | 720 | 25 | 381 | Protein SCARECROW |
5b3h_D | 2e-50 | 353 | 720 | 25 | 381 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX577484 | 0.0 | JX577484.1 Gossypium hirsutum clone NBRI_GE9321 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646434.1 | 0.0 | PREDICTED: scarecrow-like protein 30 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A2P5Y703 | 0.0 | A0A2P5Y703_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.010G201000.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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