PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1396

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 428aa MW: 47520.2 Da PI: 5.7822

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1396	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	223	270	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gh_A06G1396 223 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVDDAIKYIKEL 270 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-15	221	289	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.085	221	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-11	222	270	No hit	No description
Pfam	PF00010	3.0E-12	224	270	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-12	224	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-10	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MKVYEESGCF DPHSIPDCQE LMGLPGPTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSPEADAAAT AAAGAYTTTP 120 DLLSLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV 180 PADDKDAAGV GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK 240 YQALRTMVPS PTKNDRASIV DDAIKYIKEL LGTVRELQIL VDKKRCGQER SKRLKTEDAA 300 SAADAGDVEC KPLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL 360 LFVSRLLDEL QLDLQHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI NVVDRQYAAA 420 PPTNSTSL

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MKVYEESGCF DPHSIPDCQE LMGLPGPTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSPEADAAAT AAAGAYTTTP  120
DLLSLFHLPR CSFLPNPSIS FETTPGSPSV VYDPLFHLNL PPQPPVFREL LQSLPHGYTV  180
PADDKDAAGV GGLYHDGDNG IIQFTRDISM AGRAKDRDKA GKTTKHFATE RERRVHLNDK  240
YQALRTMVPS PTKNDRASIV DDAIKYIKEL LGTVRELQIL VDKKRCGQER SKRLKTEDAA  300
SAADAGDVEC KPLGDPDQCY NTSLRSSWLQ RKSKDSEVDV RIVDDEVTIK LVQRKKINCL  360
LFVSRLLDEL QLDLQHVAGG NIGDYYSFLF NTKIYEGSSV YACAIANKLI NVVDRQYAAA  420
PPTNSTSL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3029	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016681703.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1U8IZB5	0.0	A0A1U8IZB5_GOSHI; transcription factor bHLH91-like
STRING	Gorai.010G191900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	1e-102	bHLH family protein