PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_A06G1395

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 430aa MW: 47535.3 Da PI: 5.7834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_A06G1395	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.6	1.3e-14	225	272	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gh_A06G1395 225 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVDDAIKYIKEL 272 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.085	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	8.9E-15	223	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.02E-11	224	272	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-12	226	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.0E-12	226	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.9E-10	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MKVYEESGCF DPHSIPDCQE LMGLPGTTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEAAAAA AAAAAGAYSP 120 TPDLLSLFHL PRCSFLPNPS ISFETTPGSP SVVYDPLFHL NLPPQPPVFR ELLQSLPHGY 180 TVPADDKDAA GVGGLYHDGD NGIIQFTRDI SMAGRAKDRD KAGKTTKHFA TERERRVHLN 240 DKYQALRTMV PSPTKNDRAS IVDDAIKYIK ELLGTVRELQ ILVDKKRCGQ ERSKRLKTED 300 AASAADAGDV EIKSLGDPEQ CYNTSLRSSW LQRKSKDSEV DVRIVDDEVT IKLVQRKKIN 360 CLLFVSRLLD ELQLDLLHVA GGNIGDYYSF LFNTKIYEGS SVYACAIANK LIDVVDKQYA 420 AAPPTSSTSL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MKVYEESGCF DPHSIPDCQE LMGLPGTTPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVLPS SSSPEAAAAA AAAAAGAYSP  120
TPDLLSLFHL PRCSFLPNPS ISFETTPGSP SVVYDPLFHL NLPPQPPVFR ELLQSLPHGY  180
TVPADDKDAA GVGGLYHDGD NGIIQFTRDI SMAGRAKDRD KAGKTTKHFA TERERRVHLN  240
DKYQALRTMV PSPTKNDRAS IVDDAIKYIK ELLGTVRELQ ILVDKKRCGQ ERSKRLKTED  300
AASAADAGDV EIKSLGDPEQ CYNTSLRSSW LQRKSKDSEV DVRIVDDEVT IKLVQRKKIN  360
CLLFVSRLLD ELQLDLLHVA GGNIGDYYSF LFNTKIYEGS SVYACAIANK LIDVVDKQYA  420
AAPPTSSTSL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3029	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016753832.1	0.0	PREDICTED: transcription factor bHLH91-like
Refseq	XP_016753833.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A1U8PTZ6	0.0	A0A1U8PTZ6_GOSHI; transcription factor bHLH91-like
STRING	Gorai.010G191900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	8e-97	bHLH family protein