PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1334
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 359aa    MW: 40586.6 Da    PI: 6.851
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1334genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092873212155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gh_A06G1334 287 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 321
                  569*****************************885 PP
2ELK41.13.6e-14241262122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Gh_A06G1334 241 ELKGQLLRKYSGYLGSLKQEFM 262
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.8E-20105149IPR005540KNOX1
PfamPF037902.8E-22107145IPR005540KNOX1
SMARTSM012564.9E-27154205IPR005541KNOX2
PfamPF037914.0E-21157204IPR005541KNOX2
PROSITE profilePS5121311.174241261IPR005539ELK domain
PfamPF037895.9E-11241262IPR005539ELK domain
SMARTSM011882.8E-8241262IPR005539ELK domain
PROSITE profilePS5007112.989261324IPR001356Homeobox domain
SuperFamilySSF466891.45E-19263338IPR009057Homeodomain-like
SMARTSM003897.4E-13263328IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-28266326IPR009057Homeodomain-like
CDDcd000861.62E-12273325No hitNo description
PfamPF059206.4E-17281320IPR008422Homeobox KN domain
PROSITE patternPS000270299322IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEGGSSSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HQQHHHHPNS GSSSLFLPQP  60
PTNNQDQNHN SSSGSSMILD DQHNTTTSNN NNTGCYFMES NDGSSSVKAK IMAHPHYHRL  120
LAAYVNCQKV GAPPEMVARL EEACASAATM GPTRTGCIGE DPALDQFMEA YCEMLTKYEQ  180
ELTKPFKEAM LFLQRVECQF KALTVSSPNP ACGEGVDRNA SSEEDVDVNN NFIDPLAEDR  240
ELKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLD WWSRHYKWPY PSESQKLALA  300
ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDAAHPHY YMDNVLGNPF PMDLSPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256265LKQEFMKKRK
2262266KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.220490.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753720.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-159HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8PRA90.0A0A1U8PRA9_GOSHI; homeobox protein SBH1-like
STRINGGorai.010G183800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-143KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]