PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1322 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 512aa MW: 55619.8 Da PI: 6.7009 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.5 | 8.9e-31 | 265 | 323 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_A06G1322 265 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 323 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 249 | 325 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.5E-28 | 257 | 325 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.677 | 259 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-36 | 264 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-26 | 266 | 323 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MAMAPKGDDP HDSGIGTSSD ENRLPVDELD FFSAATVNVK KENFHADCAR LDVNTGLNLL 60 TANAGSDQST VDDGVSSDVD DKRVKNEVAQ LQVELKRMNA ENQKLKDMVN DVSNNYSALQ 120 MHLVNLMQQH QRHEINEVKE QEASLIVPRQ FMDLRPSGIA ETDHEPSHSS SEERTPSGSP 180 PNNVQVTSPK DYLKTKNPVS QLDQESSSFR DGKRIGREES PESENLGRNK LQKMNPSKPI 240 DQATEATMRK ARVSVRARSE APMISDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK 300 QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTASAAT MLLSGSMHSG DGMMNPNLFP 360 RTMLPCSSMA TISASAPFPT VTLDLTHSPN ALQFQRPNTQ FHVPFPGQPQ NSTSTSATQF 420 PQVFGQALYN QSKFSGLQLS QDIVSSSQLQ QPQQSTLADT VSAATAAIAN DPSFTAALAA 480 AITSIIGGAH PNSSSNTSNN NNNNGNTTNS RQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-22 | 251 | 327 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3273 | 0.0 | ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031090 | 0.0 | KF031090.1 Gossypium hirsutum WRKY transcription factor 45 (WRKY45) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017644822.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 isoform X1 | ||||
Swissprot | Q9C519 | 1e-154 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U8PRD8 | 0.0 | A0A1U8PRD8_GOSHI; probable WRKY transcription factor 31 | ||||
STRING | Gorai.010G182500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-123 | WRKY family protein |