PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_A06G1226 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 35313.1 Da PI: 9.1695 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.2 | 4e-50 | 29 | 160 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 l pGfrFhPtdeelv +yL++kve+k +++ ++ik+vdiyk++PwdLpk k+++ +ekewyfF++r +ky+++ r+nr+t sg+Wkatg dk+++s Gh_A06G1226 29 LLPGFRFHPTDEELVGFYLRRKVEKKLFSI-DIIKHVDIYKHDPWDLPKvsKLSSgTEKEWYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSV 125 579***************************.99***************54544333677**************************************9 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkk+Lv+ykg+a kg+ktdW+mhe+rl Gh_A06G1226 126 ggFHDCIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 160 443455***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-55 | 19 | 190 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.625 | 29 | 190 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-26 | 31 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MYLKVVKEIV RRIEMEVMEK MISEDEDVLL PGFRFHPTDE ELVGFYLRRK VEKKLFSIDI 60 IKHVDIYKHD PWDLPKVSKL SSGTEKEWYF FCRRGRKYRN SIRPNRVTGS GFWKATGIDK 120 PIYSVGGFHD CIGLKKSLVY YKGSAGKGTK TDWMMHEFRL PPPSTTTLSS TNKDNLPEAE 180 VWTLCRIFKR DVSSRKFASD WQNKKNKQNT NTSASSSRAC SVESENSLKV ENFGVLDDKG 240 IERKLQNDHF LGGNQLFAAT TQVLPSYLSF SNPNAADEYF GQEHWDELRP VVDYTIAKSL 300 QYSDW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-49 | 29 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-49 | 29 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-49 | 29 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-49 | 29 | 196 | 17 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-49 | 29 | 196 | 20 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-49 | 29 | 196 | 17 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-49 | 29 | 196 | 17 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847210 | 0.0 | KC847210.1 Gossypium hirsutum NAC domain protein NAC33 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016753414.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Swissprot | Q9SK55 | 7e-86 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A1U8PT09 | 0.0 | A0A1U8PT09_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
STRING | Gorai.010G171100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12910.1 | 6e-83 | NAC family protein |