PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A06G1226
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 305aa    MW: 35313.1 Da    PI: 9.1695
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A06G1226genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.24e-50291601128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                  l pGfrFhPtdeelv +yL++kve+k +++ ++ik+vdiyk++PwdLpk  k+++ +ekewyfF++r +ky+++ r+nr+t sg+Wkatg dk+++s 
  Gh_A06G1226  29 LLPGFRFHPTDEELVGFYLRRKVEKKLFSI-DIIKHVDIYKHDPWDLPKvsKLSSgTEKEWYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSV 125
                  579***************************.99***************54544333677**************************************9 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  +glkk+Lv+ykg+a kg+ktdW+mhe+rl
  Gh_A06G1226 126 ggFHDCIGLKKSLVYYKGSAGKGTKTDWMMHEFRL 160
                  443455***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5519190IPR003441NAC domain
PROSITE profilePS5100553.62529190IPR003441NAC domain
PfamPF023657.8E-2631160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MYLKVVKEIV RRIEMEVMEK MISEDEDVLL PGFRFHPTDE ELVGFYLRRK VEKKLFSIDI  60
IKHVDIYKHD PWDLPKVSKL SSGTEKEWYF FCRRGRKYRN SIRPNRVTGS GFWKATGIDK  120
PIYSVGGFHD CIGLKKSLVY YKGSAGKGTK TDWMMHEFRL PPPSTTTLSS TNKDNLPEAE  180
VWTLCRIFKR DVSSRKFASD WQNKKNKQNT NTSASSSRAC SVESENSLKV ENFGVLDDKG  240
IERKLQNDHF LGGNQLFAAT TQVLPSYLSF SNPNAADEYF GQEHWDELRP VVDYTIAKSL  300
QYSDW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-492919617171NO APICAL MERISTEM PROTEIN
1ut4_B9e-492919617171NO APICAL MERISTEM PROTEIN
1ut7_A9e-492919617171NO APICAL MERISTEM PROTEIN
1ut7_B9e-492919617171NO APICAL MERISTEM PROTEIN
3swm_A9e-492919620174NAC domain-containing protein 19
3swm_B9e-492919620174NAC domain-containing protein 19
3swm_C9e-492919620174NAC domain-containing protein 19
3swm_D9e-492919620174NAC domain-containing protein 19
3swp_A9e-492919620174NAC domain-containing protein 19
3swp_B9e-492919620174NAC domain-containing protein 19
3swp_C9e-492919620174NAC domain-containing protein 19
3swp_D9e-492919620174NAC domain-containing protein 19
4dul_A9e-492919617171NAC domain-containing protein 19
4dul_B9e-492919617171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472100.0KC847210.1 Gossypium hirsutum NAC domain protein NAC33 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016753414.10.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1
SwissprotQ9SK557e-86NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A1U8PT090.0A0A1U8PT09_GOSHI; transcription factor JUNGBRUNNEN 1-like isoform X1
STRINGGorai.010G171100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.16e-83NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]