PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_A06G1188 | ||||||||
Common Name | WRKY44 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 276aa MW: 31754.7 Da PI: 9.4329 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 107.4 | 7.1e-34 | 136 | 193 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+ Gh_A06G1188 136 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCRVKKRVERSFQDPSMVITTYEGQHKHP 193 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.7E-35 | 120 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.32E-30 | 127 | 195 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.776 | 130 | 195 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-39 | 135 | 194 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 136 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MWDHEFRNFH CPTDHTCSRV SLSAADPCSY MRFNFTDSLQ SPIGYGRSLE KALAFSHSSS 60 SQPPFSSVGT TPNSCISYSS TQDDSDKSNK ESQLKELEDG SESCKKGNKL PNKKREKKHK 120 ETRFAFMTKS EVDLLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCRVKK RVERSFQDPS 180 MVITTYEGQH KHPLPTTVKR SMLFPSFMLR PSPPPPRRRH ELFTQMPGDM NNYQAAAGAD 240 SLMFAENFSP FRQVPDNGLL QDMVPSAFLK HEPYEQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-30 | 125 | 195 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-30 | 125 | 195 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031089 | 0.0 | KF031089.1 Gossypium hirsutum WRKY transcription factor 44 (WRKY44) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755416.1 | 0.0 | PREDICTED: probable WRKY transcription factor 71 | ||||
Swissprot | Q93WV4 | 3e-54 | WRK71_ARATH; WRKY transcription factor 71 | ||||
TrEMBL | A0A1U8PWB3 | 0.0 | A0A1U8PWB3_GOSHI; probable WRKY transcription factor 71 | ||||
STRING | Gorai.010G164700.1 | 1e-174 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1524 | 26 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 7e-55 | WRKY DNA-binding protein 71 |
Publications ? help Back to Top | |||
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